Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0156 ATGCCAGCACAGAAGCGAGCTTTCGATGCAATGGAGGGTGATCCTCTGCAGCGCCACCACGGAAACCACCATGAGCCACCAGAAGATGGGGACGGATACGAATCTGATCGAAGCCCTTCGTGGAGTAACGGAGAGAAGGACGAATTTGTCATAGTAAAATTGGCAGAAATACGCAAGGAAGTGCAGTGTCCAATTTGCCTTGGGATCATCCGGAAGACTCGAACAGTAATGGAATGCTTGCATCGCTTCTGCAGGGAATGCATTGACAAATCCATGCGACTGGGTAACAATGAGTGTCCTGCATGCCGCACACATTGTGCTAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCTCTGATAGCAGCCCTATATCCAGATATTGATAAGTATGAGCAGGAGGAACTGGCTTTTCATGAAGAGGAGAAGACTCGTAATAAGCAGATCCAAGCTTCTATTGCCCAAACTTTGCGAAGACAATCAGAAGCGCTTGGCAGGAAAAGGACAACAGCAAAAGCCACTGCGGCTGCATTTGCAAGGAGATCCCAGGGTAATTATCGACGGGGGAGGAGGAACTATCGAGCTACTGATCTTCTAGGATCTGAGGATGATGAGGATGCAAATGGTAATGATGGAGGCAAAGATTCATCTTCTGCTGAAGATCATTCTGCAGAAGTCAAACCAAAAAGAAGCAGGAGGTGGGGAGGAGTTCGGTTTTCTCAGCCTTCCTCGGGAGCCGCCAATGCAGATGGAGGGGGTGATGAAAATGATTTGGAACCAAACAGAGAAGCCATGGGTGCATCTGCAGGGCTTGTTGGCAACTCAGAAATACTTGCATGGGGCAAAGGTGGCATGCGGAGTCACACTCGATATGGCAGTGTGAGTGGTGGTAATGGTAAGAATGCACGGAGCAGCCGCCTCTCTAAGTTGGTAGATTATCTCCGTAACTTGGACCAAAATGATGATGAGTTGGATATCCATCTCATGCTTGTTTCACTAGATGAACAAAGAATACCGAGTCTGCAGACGCCATACCTTTGCTGCAGGCCCACTTTGTCTGTTAGACACCTCTGCCAGTATGTTGCTCTTCAAACCCCATTGCTAGCCGATGAAGTTGAGATATTGGTGATAAAAGAGCAACTTTCCAAGCTAAACCCTTCAAACTCCAGCAGCCCCGACCCATGCAGTGATAGGTTGCAAGTTTTAGAAGCACAAGAAACTCTGGCAGTACTCAAGACCATGCGCAATGCCAACCAAAGCCATCTGTTACGTTGTTTCCAGCTTCTTGCATACCGGAGAAAGTTGTCAGCTTAG 1317 0.4791 MPAQKRAFDAMEGDPLQRHHGNHHEPPEDGDGYESDRSPSWSNGEKDEFVIVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELAFHEEEKTRNKQIQASIAQTLRRQSEALGRKRTTAKATAAAFARRSQGNYRRGRRNYRATDLLGSEDDEDANGNDGGKDSSSAEDHSAEVKPKRSRRWGGVRFSQPSSGAANADGGGDENDLEPNREAMGASAGLVGNSEILAWGKGGMRSHTRYGSVSGGNGKNARSSRLSKLVDYLRNLDQNDDELDIHLMLVSLDEQRIPSLQTPYLCCRPTLSVRHLCQYVALQTPLLADEVEILVIKEQLSKLNPSNSSSPDPCSDRLQVLEAQETLAVLKTMRNANQSHLLRCFQLLAYRRKLSA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0156 438 Pfam Zinc finger, C3HC4 type (RING finger) 62 102 - -
Vvi10g0156 438 ProSiteProfiles Zinc finger RING-type profile. 63 103 IPR001841 -
Vvi10g0156 438 MobiDBLite consensus disorder prediction 1 42 - -
Vvi10g0156 438 MobiDBLite consensus disorder prediction 162 262 - -
Vvi10g0156 438 SUPERFAMILY RING/U-box 50 134 - -
Vvi10g0156 438 SMART ring_2 63 102 IPR001841 -
Vvi10g0156 438 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
Vvi10g0156 438 MobiDBLite consensus disorder prediction 11 42 - -
Vvi10g0156 438 PANTHER OS11G0578200 PROTEIN 18 435 IPR044592 -
Vvi10g0156 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 126 IPR013083 -
Vvi10g0156 438 MobiDBLite consensus disorder prediction 216 233 - -
Vvi10g0156 438 CDD RING-HC_RING1-like 60 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0156 Vvi-Chr10 1391740 1397473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0156 45 232 C3H Transcription Factor Family AT2G30580 26.289 6.01e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0156 K10695 - vvi:100267448 788.489