Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0154 ATGGAGGAGACTTCCGGCTATAAGGAGTATGTGGCGGGTTTGCTTGCCGGGGTAGCCACTGTTGGCATCGGTCATCCCTTCGACACCGTCAAGGTGAAGTTGCAAAAACACAATACTGAAGCACATGGAATGAAGTACAAGAATGGCTTGCATTGCACTGCTAGGATAGTGAAGAGTGAAGGAGTGAAAGGACTCTATAGAGGGGCAACATCATCTTTCCTTGGGATGGCCTTTGAAAGCTCGCTTCTTTTTGGCATATATTCCCGAACAAAACAAAAAATGCAGGAAGGACTACAAAATACTAGGCCACAGCCCCAAGTAATAATTCCTTCAGCAGCTTACAGTGGGGCTATTATTAGTTTTGTATTATGTCCATCAGAGCTACTGAAGTGTAGGATGCAAATTCAAGGGACTGACTCTTTGGTTCCAAAGTCTAGTAGATACAGTAGTCCTCTTGATTGTGCCCTTAAAACCATGAAAACTGAAGGGGTTACGGGCATTTTTCGTGGAGGTCTTACAACCTTATTGAGAGAATCTTTTGGGAATGCTGTCTTTTTCAGCGTTTATGAGTATGTTCGCTATTACATGCATTTGCAACTGAAAGCTGCTTCATCTGACCACAACGACTTGATTGATGTGGGAATTGGGATTGTTACTGGTGGCCTTGGTGGTGTAGCTTTCTGGTCTGCTGTTCTACCCTTGGATGTGGCAAAAACAATAATTCAGACTGCCTCAGATAAAAGTTCTACTAAAAATCCTTTTCGGATATTGAACTCGATTTACAGAAGGGCTGGACTTAGAGGATGCTATACAGGTTTGGGTCCTACAATAGCTAGAGCATTTCCTGCTAATGCAGCTGCAATTGTTACCTGGGAGCTTGCCATAAAACTTTTAGGTATCAAGCGTGAGTAA 912 0.432 MEETSGYKEYVAGLLAGVATVGIGHPFDTVKVKLQKHNTEAHGMKYKNGLHCTARIVKSEGVKGLYRGATSSFLGMAFESSLLFGIYSRTKQKMQEGLQNTRPQPQVIIPSAAYSGAIISFVLCPSELLKCRMQIQGTDSLVPKSSRYSSPLDCALKTMKTEGVTGIFRGGLTTLLRESFGNAVFFSVYEYVRYYMHLQLKAASSDHNDLIDVGIGIVTGGLGGVAFWSAVLPLDVAKTIIQTASDKSSTKNPFRILNSIYRRAGLRGCYTGLGPTIARAFPANAAAIVTWELAIKLLGIKRE* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0154 303 FunFam Mitochondrial carrier protein 1 106 - -
Vvi10g0154 303 Pfam Mitochondrial carrier protein 111 196 IPR018108 -
Vvi10g0154 303 Pfam Mitochondrial carrier protein 5 95 IPR018108 -
Vvi10g0154 303 Pfam Mitochondrial carrier protein 217 298 IPR018108 -
Vvi10g0154 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 195 IPR018108 -
Vvi10g0154 303 FunFam Mitochondrial carrier protein 107 302 - -
Vvi10g0154 303 SUPERFAMILY Mitochondrial carrier 5 292 IPR023395 -
Vvi10g0154 303 Gene3D Mitochondrial carrier domain 2 110 IPR023395 -
Vvi10g0154 303 Gene3D Mitochondrial carrier domain 111 302 IPR023395 -
Vvi10g0154 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 297 IPR018108 -
Vvi10g0154 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 5 298 - -
Vvi10g0154 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 93 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0154 Vvi-Chr10 1349968 1356796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0154 24 298 Antiporters AT1G79900 28.520 6.44e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0154 K15109 - vvi:100255452 574.704