Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0153 ATGGAAATGAGCAAGGCTCAAGGTAAGAGAACCTTGATGGAGGAGGAGGAAGAGGATGATGAAGATACTGTTGGGTTAGGGTTTGGAGAGGATGAGAAGAAGAAGAAAGCAGTGACCCTCACCAACAAGAAAGGATCTGGGGGAGCGGGGTCAACGCCGCCTTCTTGTCAGGTGGATAACTGCACCGCTGACATGTCCGAGGCCAAAAGATACCACAAGCGGCACAGGGTGTGTGAACATCATGCCAAGGCTCCGGTCATTCTCATTGCCGGAATCCAGCAGAGGTTCTGTCAGCAATGCAGCAGGTTAGGAAACCCTAATTTTCCAAAACATTTCTGGTTCCATGAGCTATCCGAGTTTGATGACACTAAAAGAAGTTGCCGCAGGCGCTTGGCCGGACACAACGAGCGGCGCCGCAAAAGCTCATCTGAATCTCATGGAGAAGGCTCCAGCTGA 456 0.5132 MEMSKAQGKRTLMEEEEEDDEDTVGLGFGEDEKKKKAVTLTNKKGSGGAGSTPPSCQVDNCTADMSEAKRYHKRHRVCEHHAKAPVILIAGIQQRFCQQCSRLGNPNFPKHFWFHELSEFDDTKRSCRRRLAGHNERRRKSSSESHGEGSS* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0153 151 Pfam SBP domain 56 140 IPR004333 GO:0003677
Vvi10g0153 151 MobiDBLite consensus disorder prediction 137 151 - -
Vvi10g0153 151 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 142 IPR044817 GO:0003677
Vvi10g0153 151 MobiDBLite consensus disorder prediction 131 151 - -
Vvi10g0153 151 Gene3D - 47 128 IPR036893 GO:0003677|GO:0005634
Vvi10g0153 151 MobiDBLite consensus disorder prediction 1 57 - -
Vvi10g0153 151 PIRSF SBP 1 151 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vvi10g0153 151 ProSiteProfiles Zinc finger SBP-type profile. 53 141 IPR004333 GO:0003677
Vvi10g0153 151 SUPERFAMILY SBT domain 54 144 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0153 Vvi-Chr10 1346444 1348442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0153 1 144 SBP-box Gene Family AT2G33810 54.861 1.95e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi10g0153 SBP 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0153 - - vri:117923848 276.559