Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0148 ATGGCTGAAGAATTGAGGCATAGTCCAGGAGGCAAGTCTGGGACGAGGACAAAGTCCCCTGCTCCTTTCCTGTTGAAGACCTACGATCTGTTGGAAGGAGTTATAGATACGAGTAATGGGGATGGGGGGCAGAGAATCGTGTCTTGGAATGCAGATGGAACAGGGTTTGTGGTATGGTCCCCTGATGAATTTTCAGAGATCATGCTGCCTAGATACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAATACTTATGGATTCAAGAAGATAGCTTCCAAGAGATGGGAATTCCAGCATGACAAGTTCCAGAGGGGATGCAGGGACATGCTTGCAGAGATAACCCGGAAGAAGTGTGAGCCCAGCATCTTCCCACCATTCCTAAAGGCTTCCAAAGACAACACAGCATCTTCTGCAGACCAAAAAAGCAATTGCCTGTCACTCATGGAGGAGAATGAGAGCCTAAGAAGGCAAAATTTGGATTTGCAAATGCAGATATCCCAGCTCAAAGCTCTGGAAATGAAGCTCATGGATTGTCTTAATGTCTCAATTCATGGGCACCACCACCCTCACAACAAACTTAGGAGGCTCTTCTAA 603 0.4677 MAEELRHSPGGKSGTRTKSPAPFLLKTYDLLEGVIDTSNGDGGQRIVSWNADGTGFVVWSPDEFSEIMLPRYFKHNNFSSFVRQLNTYGFKKIASKRWEFQHDKFQRGCRDMLAEITRKKCEPSIFPPFLKASKDNTASSADQKSNCLSLMEENESLRRQNLDLQMQISQLKALEMKLMDCLNVSIHGHHHPHNKLRRLF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0148 200 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 176 IPR027725 -
Vvi10g0148 200 MobiDBLite consensus disorder prediction 1 20 - -
Vvi10g0148 200 Pfam HSF-type DNA-binding 23 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0148 200 SUPERFAMILY "Winged helix" DNA-binding domain 19 119 IPR036390 -
Vvi10g0148 200 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0148 200 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0148 200 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0148 200 FunFam Heat stress transcription factor A-6b 16 120 - -
Vvi10g0148 200 SMART hsfneu3 19 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0148 200 Coils Coil 147 174 - -
Vvi10g0148 200 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0148 200 Gene3D - 15 120 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0148 Vvi-Chr10 1300006 1301645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0148 11 174 HSF AT5G62020 39.487 4.02e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi10g0148 HSF_DNA-bind 1.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0148 K09419 - vvi:100855171 415.231