Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0133 ATGAAATTAGAAAGCTCGGAGGTCGAGATCTGTGCGGCGGTTGTCGGAGCTCCATCTCCGACCGGGCAGATCTCGTTGGCGGCTATGGTTCAGGGGAGCGGCGATGAAGATGATAGAGATGGAGAAGAGCTGTTCGTGCCGCCTCTGAACTTCGCGATGGTTGATTGTGGCGTTTTCAGGTCTGGTTTTCCCGATATTGCCAATTTCACCTTCTTGCAGACGCTTGGCCTTCGTTCGATCATATATCTCTGCCCTGAGCCTTATCCTGAACCGAACATCGAGTTTCTCAAATGTAATGGAATTCGGCTCTTCCAGTTTGGGATCGATGGATGTAAGGAGCCTTTCGTAAACATCCCAGAGGACACAATTCGTGAAGCATTGAAAGTGGTCCTTGATAAAAGAAATCACCCACTCCTCATTCATTGCAAACGAGGGAAGCACCGCACTGGTTGCCTTGTGGGATGCTTAAGAAAGCTGCAACGATGGTGCCTGTCTTCAATTTTTGATGAGTACCAGAGGTTTGCTGCCGCCAAAGCTAGAATATCAGACCAGAGGTTTATGGAATTGTTTGATATTTCCAGCTTCAAGCACTTGCCAATGACATCTCCACCTTCTAGAAGGTGCCAAAGCTAA 633 0.4818 MKLESSEVEICAAVVGAPSPTGQISLAAMVQGSGDEDDRDGEELFVPPLNFAMVDCGVFRSGFPDIANFTFLQTLGLRSIIYLCPEPYPEPNIEFLKCNGIRLFQFGIDGCKEPFVNIPEDTIREALKVVLDKRNHPLLIHCKRGKHRTGCLVGCLRKLQRWCLSSIFDEYQRFAAAKARISDQRFMELFDISSFKHLPMTSPPSRRCQS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0133 210 PRINTS Plant and fungal dual specificity phosphatase signature 45 62 IPR020428 GO:0016791
Vvi10g0133 210 PRINTS Plant and fungal dual specificity phosphatase signature 118 132 IPR020428 GO:0016791
Vvi10g0133 210 PRINTS Plant and fungal dual specificity phosphatase signature 82 95 IPR020428 GO:0016791
Vvi10g0133 210 PRINTS Plant and fungal dual specificity phosphatase signature 101 115 IPR020428 GO:0016791
Vvi10g0133 210 ProSiteProfiles Dual specificity protein phosphatase domain profile. 50 201 IPR020422 GO:0006470|GO:0008138
Vvi10g0133 210 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
Vvi10g0133 210 Gene3D Protein tyrosine phosphatase superfamily 44 194 IPR029021 -
Vvi10g0133 210 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 45 192 IPR029021 -
Vvi10g0133 210 PANTHER TYROSINE-PROTEIN PHOSPHATASE 45 197 - -
Vvi10g0133 210 CDD PFA-DSP_Siw14 44 191 - -
Vvi10g0133 210 Pfam Tyrosine phosphatase family 46 197 IPR004861 -
Vvi10g0133 210 FunFam probable tyrosine-protein phosphatase At1g05000 44 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0133 Vvi-Chr10 1185857 1187792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0133 31 207 Protein tyrosine phosphatase (PTP) family AT4G03960 72.881 1.07e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0133 K18045 - vvi:100256357 428.713