Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0121 ATGGGTTGTTTTAGCAGTAAGGAGAGGGTTACAGAAAGGGATATTAAGGGTGGAAGATCAGAGAGGGGTGGTGGAGGTGGAGGTGGTGGTGGAAGGAATCACCAAGGGTACCAAGAAGTTGTTGTTCAGCACCCGCCGCCAGTGCCTGCCCCTCAGACTGCAGCCCCAACACAGACTTACCACCAACCACCACCACAGCCGCCACTCAAGCCTTCACATCCCAATACCAGAGCTATTCAGAAGCCAGATACCATATTGGGTAGGCCATTTGATGATATTAAGCATTACTATACTCTTGGTAAGGAACTGGGTAGGGGGCAGTTTGGAGTGACTTACCTCTGTACTCAGAATTCAACTGGCAACACATATGCCTGCAAATCAATATTGAAGAGAAAGCTTGTGACTAAAAATGATAAGGAGGATATAAAGAGAGAGATTCAGATCATGCAGCATCTGACTGGGCAGCCAAACATTGTGGAATTCAAGGGTGCTTATGAGGATAGGCACTCAGTGCACCTTGTGATGGAGCTCTGTGCTGGTGGGGAGCTCTTTGATAGAATCATTTCTCAGGGGCATTACTCTGAGAGAGCTGCTGCAGCAATTTGTAGGGCTATTGTGAATGTTGTCCACATCTGCCATTTCATGGGTGTGATGCATCGCGATCTCAAGCCTGAGAATTTCTTGTTGTCCAGCAAGGATGAAGCAGCAATGCTGAAGGCAACTGATTTTGGGTTGTCTGTCTTCATTGAGGAAGGAAAGGTGTATCGTGATATAGTAGGTAGTGCCTACTATGTTGCTCCAGAAGTATTACGGCGTAATTATGGGAAGGAAATAGATATTTGGAGTGCAGGAGTTATTTTGTATATTCTACTCAGTGGTGTACCTCCATTTTGGGCTGAAACTGAAAAGGGAATATTTGATGCCATATTGCAAGGAGAAATTGACTTCGAAAGTCAACCATGGCCAGCTATATCAAATGGTGCCAAAGATCTAGTCAGGAAGATGCTGACACAGGACCGGAACAAGCGTATTACTTCTGCACAAGTTCTTGAGCATCCATGGATAAGAGAAGATGGAGAAGCATCAGACAAGCCAATAGACAGTGCTGTACTCTCTAGAATGAAGCAATTTAGGGCAATGAACAAGCTCAAGAAGCTCGCATTGAAGGTTATTGCAGAAAATCTATCTGAAGAAGAAATCAAAGGTCTTAAAGCAATGTTCACCAACATGGACACTGACAAGAGTGGTACAATCACTTATGAAGAACTGAAGAGCGGATTGGCTCGACTTGGTTCAAGGCTCTCAGAGACTGAAGTCCAACAACTCATGGAAGCTGCTGATGTGGATGGCAATGGAACAATTGACTACATTGAATTTATCACTGCTACAATGCACAGACACAGACTAGAAAGAGATGAGCATCTCTATAAAGCTTTTAACTATTTTGATAAGGATAACAGTGGCTTTATAACAAGAGATGAATTGGAAAATGCCATGAAGGAGTATGGGATGGGTGATGAAGACAGCATCAAGGAAATAATTAATGAGGTTGATACAGATAAGGATGGGAGGATCAACTATAAGGAGTTTTGCACAATGATGAGAAGTGGAACACAACCGCCAGTCAAGCTATTTTAG 1638 0.4365 MGCFSSKERVTERDIKGGRSERGGGGGGGGGRNHQGYQEVVVQHPPPVPAPQTAAPTQTYHQPPPQPPLKPSHPNTRAIQKPDTILGRPFDDIKHYYTLGKELGRGQFGVTYLCTQNSTGNTYACKSILKRKLVTKNDKEDIKREIQIMQHLTGQPNIVEFKGAYEDRHSVHLVMELCAGGELFDRIISQGHYSERAAAAICRAIVNVVHICHFMGVMHRDLKPENFLLSSKDEAAMLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRNYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILQGEIDFESQPWPAISNGAKDLVRKMLTQDRNKRITSAQVLEHPWIREDGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFTNMDTDKSGTITYEELKSGLARLGSRLSETEVQQLMEAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFNYFDKDNSGFITRDELENAMKEYGMGDEDSIKEIINEVDTDKDGRINYKEFCTMMRSGTQPPVKLF* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0121 545 SUPERFAMILY Protein kinase-like (PK-like) 83 376 IPR011009 -
Vvi10g0121 545 Pfam EF-hand domain pair 473 535 IPR002048 GO:0005509
Vvi10g0121 545 Pfam EF-hand domain pair 403 463 IPR002048 GO:0005509
Vvi10g0121 545 MobiDBLite consensus disorder prediction 44 72 - -
Vvi10g0121 545 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Vvi10g0121 545 MobiDBLite consensus disorder prediction 1 83 - -
Vvi10g0121 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vvi10g0121 545 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Vvi10g0121 545 FunFam calcium-dependent protein kinase 1 183 362 - -
Vvi10g0121 545 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Vvi10g0121 545 SMART efh_1 438 466 IPR002048 GO:0005509
Vvi10g0121 545 SMART efh_1 509 537 IPR002048 GO:0005509
Vvi10g0121 545 SMART efh_1 474 502 IPR002048 GO:0005509
Vvi10g0121 545 SMART efh_1 402 430 IPR002048 GO:0005509
Vvi10g0121 545 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Vvi10g0121 545 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0121 545 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Vvi10g0121 545 ProSiteProfiles EF-hand calcium-binding domain profile. 506 540 IPR002048 GO:0005509
Vvi10g0121 545 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Vvi10g0121 545 FunFam Calcium-dependent protein kinase 1 363 538 - -
Vvi10g0121 545 FunFam Calcium-dependent protein kinase 1 99 182 - -
Vvi10g0121 545 Gene3D Transferase(Phosphotransferase) domain 1 183 363 - -
Vvi10g0121 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 92 530 - -
Vvi10g0121 545 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Vvi10g0121 545 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0121 545 ProSitePatterns Protein kinases ATP-binding region signature. 103 130 IPR017441 GO:0005524
Vvi10g0121 545 SUPERFAMILY EF-hand 394 534 IPR011992 -
Vvi10g0121 545 CDD STKc_CAMK 97 354 - -
Vvi10g0121 545 Gene3D - 364 537 - -
Vvi10g0121 545 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Vvi10g0121 545 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0121 Vvi-Chr10 1067680 1075279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0121 1 545 EF-hand Containing Proteins AT4G04720 75.046 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi10g0121 Pkinase 1.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0121 K13412 - vvi:100267574 1013.06