Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0117 ATGGGTTCTTTTCAGGCCATGGAAGAAGACTCAAAAACCTCCTCAAATGTCACCACTAGTGAGGACACCAAAGAGGAAACAGCAAAGGATTCCAAGGTGGAGTTCTCTGAAGATGAGGAGACACTCATAGCTAGAATGTTTAGATTGGTGGGAGACAGATGGAATTTGATTGCGGGAAGGATCCCGGGAAGATCTGCAGAAGAGATCAAGAAGTATTGGACTTCCAAGTCTGTCTCATCGTCGACTAAACAACATGATTGA 261 0.4444 MGSFQAMEEDSKTSSNVTTSEDTKEETAKDSKVEFSEDEETLIARMFRLVGDRWNLIAGRIPGRSAEEIKKYWTSKSVSSSTKQHD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0117 86 ProSiteProfiles Myb-like domain profile. 27 77 IPR001005 -
Vvi10g0117 86 MobiDBLite consensus disorder prediction 1 21 - -
Vvi10g0117 86 Pfam Myb-like DNA-binding domain 32 74 IPR001005 -
Vvi10g0117 86 CDD SANT 34 73 IPR001005 -
Vvi10g0117 86 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 33 77 - -
Vvi10g0117 86 Gene3D - 34 86 - -
Vvi10g0117 86 SUPERFAMILY Homeodomain-like 34 75 IPR009057 -
Vvi10g0117 86 FunFam MYB-like transcription factor 34 76 - -
Vvi10g0117 86 SMART sant 31 79 IPR001005 -
Vvi10g0117 86 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0117 Vvi-Chr10 1034269 1034704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0117 35 75 MYB Transcription Factor Family AT3G13540 60.976 9.10e-14 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi10g0117 Myb_DNA-binding 3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0117 - - vvi:100252176 172.17