Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0115 ATGTGGGTGTCCTCAAAACCTTCTCTTTCTGACAGTTCTTTGCTCTCTTTTCGCTCTTCTCTCAACCCTTTTCAGCTTCCTTCCCATAATTCCCCCACTGCCAGCCCCTCCAAGTCTGTGATTCAGTGTGGGCTCCGGGAGCTCAGGGAGCGTATCGATTCTGTGAAGAACACCCAGAAGATTACTGAAGCTATGAAGCTTGTTGCTGCAGCTAAAGTGAGGAGAGCTCAGGAGGCCGTGGTTAATGGCAGACCCTTCTCTGAGACTCTCGTTGAAGTGCTTTACAACATCAATGAGCAGCTCCAGACTGACGATATCGATGTCCCTCTGACCAAAGTCAGGCCTGTCAAGAAGGTTGCCTTGGTGGTTGTCACCGGCGACCGGGGTCTTTGTGGGGGTTTCAACAATGCGATTATCAAGAAGGCCGAGTCTAGGATTGCGGAACTGAAGGATCTTGGTCTTGATTATACTGTTATCAGTGTGGGGAAGAAGGACGATGTTTTCTCGCTATTTGTGAGTGAAGAGGTTGATAAGGTGGAGCTTCTGTACACCAAATTCGTGTCCTTGGTCAAGGCTGATCCAGTGATTCACACCTTGCTTCCTCTCTCCCCCAAGGGAGAGATCTGTGATGTGAATGGTAAATGTGTGGATGCTGCAGAGGATGAGTTCTTCAGGTTGACAACCAGGGAGGGGAAACTGACTGTGGAGAGAGATGTTATAAGGACTCAAACAGTTGAATTCTCCCCCATCTTGCAATTCGAACAGGACCCAGTTCAGATTCTTGATGCCTTGCTCCCCCTCTACCTCAACAGCCAGATTTTGAGGGCCCTGCAAGAATCACTGGCGAGTGAGCTTGCAGCCAGGATGAGTGCCATGAGTAATGCTACCGACAACGCGGTCGAACTTAAGAAGAACCTCTCCATGGTCTACAATAGGCAGCGCCAAGCCAAAATCACAGGGGAGATTTTGGAGATTGTTGCTGGAGCCGACGCCTTAGTCTAG 1002 0.497 MWVSSKPSLSDSSLLSFRSSLNPFQLPSHNSPTASPSKSVIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAESRIAELKDLGLDYTVISVGKKDDVFSLFVSEEVDKVELLYTKFVSLVKADPVIHTLLPLSPKGEICDVNGKCVDAAEDEFFRLTTREGKLTVERDVIRTQTVEFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNAVELKKNLSMVYNRQRQAKITGEILEIVAGADALV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0115 333 Pfam ATP synthase 166 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 Pfam ATP synthase 45 164 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 CDD F1-ATPase_gamma 45 329 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 FunFam ATP synthase gamma chain, chloroplastic 229 332 - -
Vvi10g0115 333 Coils Coil 45 65 - -
Vvi10g0115 333 Hamap ATP synthase gamma chain [atpG]. 42 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 Gene3D - 112 166 - -
Vvi10g0115 333 Gene3D - 167 203 - -
Vvi10g0115 333 PRINTS ATP synthase gamma subunit signature 279 298 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 PRINTS ATP synthase gamma subunit signature 116 135 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 PRINTS ATP synthase gamma subunit signature 310 331 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 332 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 111 - -
Vvi10g0115 333 Gene3D ATP synthase, gamma subunit, helix hairpin domain 232 332 - -
Vvi10g0115 333 PANTHER ATP SYNTHASE GAMMA CHAIN 165 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi10g0115 333 ProSitePatterns ATP synthase gamma subunit signature. 318 331 IPR023632 -
Vvi10g0115 333 FunFam ATP synthase gamma chain, chloroplastic 43 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0115 Vvi-Chr10 1013317 1014414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0115 23 332 Primary Pumps ATPases AT1G15700 68.116 3.90e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0115 K02115 - vvi:100264091 583.178