Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0103 ATGGCAAAGATCCTGAGCTTAAGCTCCCAAGGCTCCTATGTCATGCTGGACAATGGGTTGGTGAAACTCACAATACTGAGGCCACAAGGGTTCTTGACTGGCATCAAGTATGGAGGAATGGACAATCTTTTAGACCTCAAGTCAAGTGAAACTAACAGAGGGTATTGGGACATCAACTGGAGCTTGCCTGGAGGCCAGGACAGATACCAATTAATCAAAGGGGATGATTATAGTGTTGTTCATTCCAGTAATGAGAGTATAGAGGTTTCATTCAGGAGTACTTATGATCCATCCACTTCAGGCATCAGACTGCCACTCAGTATTGACTTGAGGTATATATTGAGGGCTGGTGTTTCAGGCTTCTACTGCTATGCAATATATGAGTTACCCCCAGGATGCCGCGCTTTTGACGTTGCTCAGACAAGGATGGTGTTCAAGTTGAGACAAGAAAGGTTCCACTACATGGCCATCTCAGATGAGAAGCAGAGGGTAATGCCCATGCCAGAGGATCTTCTTCAGAACAGAGGCAAAAAGCTGATTGTACCTGAATCAGTTCTGCTTGTGAACCCCATTAATCCCCATCTCAAAGGCGAGGTTGATGATAAGTACCAGTACTCCATGGACAACAAGGATGGAGGAGTCCATGGCTGGATAAGTTCTAAGCCTGTTGTTGGATTCTGGGTCATCTTCCCCAGCCATGAGTTTCGTAACGGGGGGCCTACCAAGCAAAACCTCACTGTCCACACTGGTCCTGCTTGCCTTGCTATGTTCCATGGAACTCATTACATTGGAGAGGATATAATGGCTCATTTCAAAGACGGGGAGACATGGAGGAAGGTCTTTGGCCCCTTCTTCGTATACCTTAATTCTACCCCAAATATATCAAATGCACACAACTTATGGCTAGATGCTAAGAAACAGAGGCTGTTGGAGGAGGCAGCATGGCCGTATGATTTTGTCTCATCACCCTATTACTTTACTGCTAAAGAACGCGGTTCAGTTTCAGGGAGACTGCTGGTCCAAGACAGGTTTGTTTCTAGTTCTCTTGTCCCTGCTAAGTATGGATATGTTGGTCTATCAGTTGCAACAACTGAAGGATCCTGGCAAACAGAAAGCAAGGGTTATCAATTCTGGGTGCAAACCGATTTGAATGGAAACTTCACCATCAAGAATGTTATCCCAGGAGCTTATGGACTTCATGGCTGGGTTCCTGGTTTCATTGGTGATTACCTTGATAATGCACGCATTACCGTCTCCTCAGGGTCACAGAAACAACTTGGCAATTTGACCTATGTTCCCATCAGAGATGGTCCAACTGTATGGGAGATCGGATTCCCAGATCGCACAACTATTGGTTTCTATGTTCCTGATGTGAATCCAATGTATGCCAACAAGTTATTTCTGAACAGCCCTGAGAAGTTCAGGCAGTATGGCTTGTGGGACAGATACACTGATCTAAACCCCAAATCTGATCAAGTTTTCACAATAGGCGTCAGTGATCCAAAGAAAGACTGGTTCTTTGCTCATGTAGACAGGAGAGGAGAAGCTAATAAGTATCTTCCAACACAATGGGAAATCAAGTTTAATCTTGATTCAGTAACCAGTGGGATTTACAAGCTGAGGTTGGCCATGGCATCAGCAACCCGCGCTGATCTTAAGGTCCACATCAATGACATGGATGTGAAGCATCTAGTGTTCCAGGTGCAGAACTTAGGAATGGACAACACAGTTTGTCGACATGGAATTCATGGACTGTACCGGCTTTACAGCATTGATATTTCTTCGTCTTTGTTGGTTAAGGGGGACAACTCCTTATTTCTCACACAGGCCAGGGGAGGAGATGCAATTTGTGGAGTCCTCTATGATTATCTTAGGCTAGAAGCTCCTGCAAGTTCATAG 1899 0.4508 MAKILSLSSQGSYVMLDNGLVKLTILRPQGFLTGIKYGGMDNLLDLKSSETNRGYWDINWSLPGGQDRYQLIKGDDYSVVHSSNESIEVSFRSTYDPSTSGIRLPLSIDLRYILRAGVSGFYCYAIYELPPGCRAFDVAQTRMVFKLRQERFHYMAISDEKQRVMPMPEDLLQNRGKKLIVPESVLLVNPINPHLKGEVDDKYQYSMDNKDGGVHGWISSKPVVGFWVIFPSHEFRNGGPTKQNLTVHTGPACLAMFHGTHYIGEDIMAHFKDGETWRKVFGPFFVYLNSTPNISNAHNLWLDAKKQRLLEEAAWPYDFVSSPYYFTAKERGSVSGRLLVQDRFVSSSLVPAKYGYVGLSVATTEGSWQTESKGYQFWVQTDLNGNFTIKNVIPGAYGLHGWVPGFIGDYLDNARITVSSGSQKQLGNLTYVPIRDGPTVWEIGFPDRTTIGFYVPDVNPMYANKLFLNSPEKFRQYGLWDRYTDLNPKSDQVFTIGVSDPKKDWFFAHVDRRGEANKYLPTQWEIKFNLDSVTSGIYKLRLAMASATRADLKVHINDMDVKHLVFQVQNLGMDNTVCRHGIHGLYRLYSIDISSSLLVKGDNSLFLTQARGGDAICGVLYDYLRLEAPASS* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0103 632 Pfam Rhamnogalacturonate lyase family 12 199 IPR010325 -
Vvi10g0103 632 SUPERFAMILY Galactose mutarotase-like 7 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vvi10g0103 632 CDD RGL4_M 330 429 IPR029413 -
Vvi10g0103 632 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 630 - -
Vvi10g0103 632 CDD RGL4_N 5 291 - -
Vvi10g0103 632 SUPERFAMILY Galactose-binding domain-like 436 627 IPR008979 -
Vvi10g0103 632 CDD RGL4_C 441 627 - -
Vvi10g0103 632 Gene3D - 5 303 IPR014718 GO:0030246
Vvi10g0103 632 Gene3D - 437 627 - -
Vvi10g0103 632 Pfam Polysaccharide lyase family 4, domain III 439 626 IPR029411 -
Vvi10g0103 632 Gene3D - 327 427 - -
Vvi10g0103 632 SUPERFAMILY Starch-binding domain-like 326 426 IPR013784 GO:0030246
Vvi10g0103 632 Pfam Polysaccharide lyase family 4, domain II 356 425 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0103 Vvi-Chr10 872672 876237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0103 5 631 Polysaccharide Lyase AT1G09910 48.726 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0103 K18195 - vvi:100260538 1307.35