Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0094 ATGGTTCGCAGGTCTGATCGCATCGCTGCCCGTCCACCTAAGAGCTTTGCTGCCCTAGAAAGCTCTGAAGAAGAAGAAGAGGAGGAGGGTGCTGGCGAAGAAGAAAGGGAAGAAGACAATGACAGGAGACTTCAAGATGTTTTTTATGATGACAAGGAAGGAGTATTGGAGCATGGACCAAAGAAAGGGCGAAAAAAGCAACAGAGCAAACCGAAACTACAATGGAAAGTTTTGGAAAAAGAGAATGAGACTTTTCTAAATTGTTGTGAAATAAAAAATCATCTTATGAATTTCGGAGATGAAGTGATTTTGGAACCTACTGAGGCGCCCCCGCACTTTCTTGTACCTCTTCTGAGCCACCAAAAGGAATGGCTGACTTGGGCTTTAAAGCAGGAGGAGTCACCTTTTAGAGGAGGGCTTCTTGCAGATGAGGCTGGAATGGGGAAGACAATCCAAGCCATTGCGCTGGTTCTTGCAAAAAAGCCAATCCATAGAATAGACGCTGGACCATGTGAAGCATTGCCTTCATCCAGTTCACAGACAGCAGAACTGCCAGAAACTAGATGCACACTCATTATCTGTCCTCCAATTGCTCTGTCTCATTGGGAGAAGGAGATTGTTCGTTGTACACCCCAAGGGAGCACCAAAGTGCTAGTCTGTCATGGGGATGAAAGAAACAAGATGGTTCATGACTTATCGAGCTATGATTTTGTTTTGACAACTTATCAGACCGTATTCACGGAATATGAGACCTCTTGTAAGTTGTGGTTTCCCGTAGATCTGGCTTCACTCTGTAGAGGATGGAGATTTGGAATTGCTGAGAGAGAGTCCGAGGAGAATTTGAAATCTTCCAAAATGGAAGCAAAATGTGCAAGTTCAGGAGATAGTACATGTGTTTGTGATGGTGGTAGAGGGAAGAGTTCTTGCAATAATAAAAAGAAGAATCCCAAGCAAAAAAAGAATGCAAGCACTTTGTCTTCCAAGTCAAGTCTATCAATCACTAGGGAATTCTCTCTGCACTCAATTAAGTGGCAACGGATTATTCTGGATGAGGCTCACTCCATAACAAACGAAACTACAAAAGCAATTTTTTCTTTAAAGTCTTCATACAAATGGGCTTTAAGTAGCACTCCAGTTCAGAATAATTTCCAAGAACTTTATTCAATGATCCGCTTTTTGCAAATATTTCCTTATGCATACCACTTTTGTCAATATTGTGACTGGAAATGTATCATGTAA 1239 0.4189 MVRRSDRIAARPPKSFAALESSEEEEEEEGAGEEEREEDNDRRLQDVFYDDKEGVLEHGPKKGRKKQQSKPKLQWKVLEKENETFLNCCEIKNHLMNFGDEVILEPTEAPPHFLVPLLSHQKEWLTWALKQEESPFRGGLLADEAGMGKTIQAIALVLAKKPIHRIDAGPCEALPSSSSQTAELPETRCTLIICPPIALSHWEKEIVRCTPQGSTKVLVCHGDERNKMVHDLSSYDFVLTTYQTVFTEYETSCKLWFPVDLASLCRGWRFGIAERESEENLKSSKMEAKCASSGDSTCVCDGGRGKSSCNNKKKNPKQKKNASTLSSKSSLSITREFSLHSIKWQRIILDEAHSITNETTKAIFSLKSSYKWALSSTPVQNNFQELYSMIRFLQIFPYAYHFCQYCDWKCIM* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0094 412 MobiDBLite consensus disorder prediction 307 326 - -
Vvi10g0094 412 MobiDBLite consensus disorder prediction 1 74 - -
Vvi10g0094 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 398 IPR027417 -
Vvi10g0094 412 Gene3D - 286 408 IPR038718 -
Vvi10g0094 412 MobiDBLite consensus disorder prediction 21 35 - -
Vvi10g0094 412 Gene3D - 119 265 IPR038718 -
Vvi10g0094 412 CDD DEXDc_SHPRH-like 117 407 - -
Vvi10g0094 412 MobiDBLite consensus disorder prediction 36 62 - -
Vvi10g0094 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 396 IPR014001 -
Vvi10g0094 412 SMART ultradead3 113 402 IPR014001 -
Vvi10g0094 412 Pfam SNF2-related domain 131 400 IPR000330 GO:0005524|GO:0140658
Vvi10g0094 412 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 32 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0094 Vvi-Chr10 832789 835777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0094 56 411 RAD5 or RAD16-like Gene Family AT1G05120 39.946 5.15e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi10g0094 SNF2_N 4.1e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0094 K15083 - vvi:100248564 766.533