Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0093 ATGAAAAATGTCGATCACATTTTAATAGGTGTGTCATCCTCTCACAGCCAAGCTCTATATTATCTTCTTTTTTTTTCCTTTCAGTGTTTAGCTATAAAAAAGTTTGCACTCAATAACCCATATCTTGTGATTTATTCTAAAGGTCCAGTACCAGGAAGGAGATATAGGATTGATTTGGCAAAGGATGATCAAGTCTGTGGCATTTGTCATGAGGCTCCAGAAGATAAAGTTGTTGCATGTTGCAAGCATGTCTTTTGTAAGACTTGTCTGCAGTCTCTTGCTCCAGCCCTTGGACTAGCTTTATGTCCCTTATGTTCAACACCATTTACTGGTAAATCTGCAATGAAGAAGAATGATTCTCCATTTACTGGTAAATCTGCAATGAAGAAGAATGATTCCGTACTGAAGAACAATACTGGTTCCGGAACAACCTTTAAAGACTTTAAATCCTCAAGTCTCTTAAAGAGAATTTCTCTCAATGAATTTCAGACAAGCACAAAAATTGAAGCTTTGAGGGAAGAAATCAGGTTCATGGTAGAAACAGATGGTTCTGCAAAAGCTCTTGTTTTTAGCGAGTTCATTTCTTTCTTGGATTTAATTGAGTACTCCTTGCTGAAGTCTGAAATAAATTGTGTAAAGCTGGTCATGGATAACACTGTTGATGCAAGAAATGCATTGGTATCAAGATTCTTCAAAGACCCAGATTGCAAAATCTTACTCACAACTTTGGAAGCTGGAGGTGTTTCCTTGAATCTCACCATCGCATCATATGTGAGCAACTCTTTTCTTTTGTTTTGGTTTACTATGAGAAATAAGAAAGAATCTGGAATCGTCTTACTTTATTTGTTGTTGGAAACAAGAAGAAAAAAAGAAGATATTTTATGA 885 0.3593 MKNVDHILIGVSSSHSQALYYLLFFSFQCLAIKKFALNNPYLVIYSKGPVPGRRYRIDLAKDDQVCGICHEAPEDKVVACCKHVFCKTCLQSLAPALGLALCPLCSTPFTGKSAMKKNDSPFTGKSAMKKNDSVLKNNTGSGTTFKDFKSSSLLKRISLNEFQTSTKIEALREEIRFMVETDGSAKALVFSEFISFLDLIEYSLLKSEINCVKLVMDNTVDARNALVSRFFKDPDCKILLTTLEAGGVSLNLTIASYVSNSFLLFWFTMRNKKESGIVLLYLLLETRRKKEDIL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0093 294 CDD SF2_C_SNF 158 258 - -
Vvi10g0093 294 ProSiteProfiles Zinc finger RING-type profile. 66 106 IPR001841 -
Vvi10g0093 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 142 IPR013083 -
Vvi10g0093 294 Gene3D - 144 264 IPR027417 -
Vvi10g0093 294 Pfam Zinc finger, C3HC4 type (RING finger) 63 110 - -
Vvi10g0093 294 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 38 258 - -
Vvi10g0093 294 SMART ring_2 66 105 IPR001841 -
Vvi10g0093 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 258 IPR027417 -
Vvi10g0093 294 SUPERFAMILY RING/U-box 61 113 - -
Vvi10g0093 294 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0093 Vvi-Chr10 822151 829404 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0093 27 258 RAD5 or RAD16-like Gene Family AT1G05120 47.414 7.51e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0093 K15083 - vvi:100248564 437.958