Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0092 ATGGTTCGCAGGTCTAATCGCATCGCTGCCCTTCCACCTAAGAGCTTTGCAGCCCTAGAAAGCTCTGAAGAAGAGGAGGAGGAGGACAGCGCTGGCGAGGAAGAAAGGGAGAAAGATGATGAAGGGAGACTTCAAGATGTTTTTGATGATGATAAGGAAGATGCATCAGAGCATAGACCAAAGAGAGGGCGAAAAAAGCAACAGAGCAAACCGAAACTACAGTGGAAAGTTTTGGAAGAAGATTATGAGACATTTCTAGATTTTTTTGAAATAAAAAACCATCTTATTGATTTCGAAGATGAAGTGATTTTGGAAACTACTGAGGCACCCCCACTTTTTCTTGTACCTCTTTTGAGCCACCAAAAGGAATGGCTGACTTGGGCTTTAGAGCAGGAGGAGTCACCTTTTAGAGGAGGGCTTCTTGCAGATGAGATGGGAATGGGGAAAACAATCCAAGTCATTGCACTGGTTCTTGCAAAAAAGCCAATCCATAGAATTGACGCTAGACCATCTAAAGCATTACCTTCATCCAGTTCACAGTCAGCAGAATTGCCAGAAACTAGATGCACACTCATTATTTGTCCTCCAGTTTGTCTGTCGCATTGGGAGAAGGAGATTGGTCGTTGTACACCTCAAGGGAGCACCAAAGTGTTGGTCTATCACGGGGATGACAGAAACAAGGTGGTTCATGACTTATCGAGTTATGATTTTGTTCTGACAACTTATCAGACTATGTTTACAAAATACAAGACCTCTTACATGGCAAGGTGTGAATTGTGTGGGAAGTGGAGGTTTCCCGAAGATCTTGCTTCACACAACACATTTTATTGTAAAGGAAGGAGAGTTGGAACTGATGAGAGAGAGTCTGAGGAGAAACTGAAATCTTCCAAAATGGAAGCAAGATGTGCAAGTTCAGAAGATAATACAAGTGATTCTGATGGTAGTAGAGGGAAGAGTTCTTGCACTAAAAAAAAGAAGAATCCTAAGCAGAAAAAGAAGGCAGACACTTCATCTTTCAAGTCAAGTCCATCAATCACTACGGAATTCTCTTTGCACTCAATTAAGTGGCAACGGATTATTCTGGATGAGGCTCACTCCATAAGAAACAAAAATTGTTATACTACAAGAGCAATTTTTTCTTTGAAGTCTTCATACAAATGGGCTTTAAGCGGCACTCCAGTTCAGAATAATTTCCAAGATCTTTACTCACTGATCCGCTTCCTGCAAATTTTTCCTTATGCATACTACTTTTGTCGTTCTTGTGACTGGAAATCAGTTAGTATCATCATGTGTTTATTTGCCCTGGTGCAATTTTCCATTCCTTTTAATTGGTTATTGAAGAAAGGAAAAGCCATTGAGAACATAGAATATAAGGATTTACTCTAA 1386 0.4048 MVRRSNRIAALPPKSFAALESSEEEEEEDSAGEEEREKDDEGRLQDVFDDDKEDASEHRPKRGRKKQQSKPKLQWKVLEEDYETFLDFFEIKNHLIDFEDEVILETTEAPPLFLVPLLSHQKEWLTWALEQEESPFRGGLLADEMGMGKTIQVIALVLAKKPIHRIDARPSKALPSSSSQSAELPETRCTLIICPPVCLSHWEKEIGRCTPQGSTKVLVYHGDDRNKVVHDLSSYDFVLTTYQTMFTKYKTSYMARCELCGKWRFPEDLASHNTFYCKGRRVGTDERESEEKLKSSKMEARCASSEDNTSDSDGSRGKSSCTKKKKNPKQKKKADTSSFKSSPSITTEFSLHSIKWQRIILDEAHSIRNKNCYTTRAIFSLKSSYKWALSGTPVQNNFQDLYSLIRFLQIFPYAYYFCRSCDWKSVSIIMCLFALVQFSIPFNWLLKKGKAIENIEYKDLL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0092 461 Gene3D - 119 264 IPR038718 -
Vvi10g0092 461 MobiDBLite consensus disorder prediction 21 35 - -
Vvi10g0092 461 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 411 IPR014001 -
Vvi10g0092 461 MobiDBLite consensus disorder prediction 287 344 - -
Vvi10g0092 461 SMART ultradead3 113 427 IPR014001 -
Vvi10g0092 461 MobiDBLite consensus disorder prediction 36 61 - -
Vvi10g0092 461 Gene3D - 286 428 IPR038718 -
Vvi10g0092 461 MobiDBLite consensus disorder prediction 287 320 - -
Vvi10g0092 461 MobiDBLite consensus disorder prediction 1 70 - -
Vvi10g0092 461 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 22 425 - -
Vvi10g0092 461 Pfam SNF2-related domain 132 415 IPR000330 GO:0005524|GO:0140658
Vvi10g0092 461 CDD DEXDc_SHPRH-like 117 418 - -
Vvi10g0092 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 413 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0092 Vvi-Chr10 804943 811831 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0092 59 422 RAD5 or RAD16-like Gene Family AT1G05120 41.351 1.26e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi10g0092 SNF2_N 3.3e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0092 K15083 - vvi:100253670 797.734