Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0091 ATGGTAGAAACAGATGGTTCTGCAAAAGCTCTTGTTTTTAGCCAGTTCGTTTCTTTCTTGGATTTAATTGATTACTCCTTGCAGAAGTCTCAAATAAATTGTGTTAAGCTGGTGGGGGATGTTGCTGCAAGAAATGCATTGGTATCAAGGTTCTTTAATGACTCAGATTGCAGAATCTTACTCACTACTTCAGAAGCTGGAGGTCTTTCCCTGAATCTCTCTGTTGCATCATATGTTTTCTTGATGGAACCCTTCTTTAGCTCTGCTGTGGAGTTGCAGGCTTGTGATGGAGTTTACCGAATCGGTCAGCACAAGGCAGTAAGAATTGTGAAGTTTGTAACTGAGAACACAATAGAAGAGAGGATTCTGGAGCTGCAAGCAAAGAAAAATCAAAATTCACAGAGTTCTGATTTACCAAATCTTGAGGAAGAACTAACAGTTAAGGACTTCAACATCTTCTTCATGTAA 468 0.3932 MVETDGSAKALVFSQFVSFLDLIDYSLQKSQINCVKLVGDVAARNALVSRFFNDSDCRILLTTSEAGGLSLNLSVASYVFLMEPFFSSAVELQACDGVYRIGQHKAVRIVKFVTENTIEERILELQAKKNQNSQSSDLPNLEEELTVKDFNIFFM* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0091 155 Pfam Helicase conserved C-terminal domain 7 102 IPR001650 -
Vvi10g0091 155 Gene3D - 2 150 IPR027417 -
Vvi10g0091 155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 146 IPR001650 -
Vvi10g0091 155 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 7 154 - -
Vvi10g0091 155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 136 IPR027417 -
Vvi10g0091 155 SMART helicmild6 21 102 IPR001650 -
Vvi10g0091 155 CDD SF2_C_SNF 5 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0091 Vvi-Chr10 798353 799615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0091 1 129 RAD5 or RAD16-like Gene Family AT1G05120 58.015 1.45e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0091 K15083 - vvi:100253670 300.441