Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0090 ATGGATGAGAAAACCATAGATCTTACAGTAGGAAGTGAGTTATATCTGAGAATTTACGTATCCTTGTATACTAAGCATAGTGGAGTATTGGAGTGTGCTTTTTATGACAATTCAGATCAATTGAAAGGAGACGATGAACAGATTGTTGAAGACTTTAATTTTACTTATATGAGAAGGGGGAAAAACAAGCCAAGATTACAGTGGGAAATTTTGGAAGAAGAAAATAGGACATTGGTTGATTCATTTGAAATGCAAAATGATGCTTCACATGACAATGAGGAGGACATTGCAGAGACTGCCGAGGCACCACCCGAGATGCTTGTACCCTTATTGAGGTACCAAAAGGAGTGGCTAGGGTGGGCATTGACGCAGGAGGAGTCTCCTTGTAGAGGGGGAATTCTCGCCGATGAAATGGGGATGGGGAAAACCATCCAAGCCATTGCTCTTGTCCTTGCCAAGCGCGCTATAAACCGATCAAATGCCGGGACAAGCAGCTCCTCACCTACACTTGTCATATGCCCTTTGGCAGCCCTGAAACAGTGGGAAACTGAGATCATTCAGTGCATGCCACCAGGAAGTGTAAAGGTGTTGGTGTACCATGGAGCAAGGAAAAGAGTGACGGGTCAGGACTTCTCGGGGTATGATTTTGTCTTGACCACATATTCAACCGTGGAGGCAGAGTGCAGATGCCGTGTACTACTTCCCAACAAAGTCTGTGATTTTTGTGGGAAGGAGTTGGATAGAGAAAATATGAACTTCCATGGTAGGATTCTCTGTCAGAAAAGCTACCAAGGCACTAGGCACCCCCGTGAGATGCATGATAATGGTGCTGGTAGAAATACGAGGGATAGGAGCAGTAGGAAGAAGCAAGATAAAGCCAGGACTGGTTCTTCCAAGCTGAATCCAGATGATGCCAAACCCTATGAACCTGAGAGAAAACTTTTTCTCGGTTCAGTTAGATGGGAACGCATAATTTTGGATGAGGCTCATGCCATAAAGAGCAGGAACAACAGTACAACCAAAGCCATTTTGGCTTTGAAATCAAAATATAAATGGGCTCTAACTGGCACTCCACTTCAGAATAGTATGGAAGAAATTTATTCACTGGCAATATATCCATATGCATACTTCTTTTGTTGGTGGTGTGATTGTAAATCCCTTGATTATGTTCACTCGGCAAGTTGTCCTTGTATCCATGGGAGGCATTTTTGTTGGTGGAACAAGTATGTTAGTAGACCGCTACAAATGGAAAATCATCAGAACAGTAGACGTGCGAGGATTTTGTTGACGCAAAAAGTTTTGAAGAGCATAATGCTAAGACGCACCAAAAAAAGTATAGCGGTTGATCTTGGCCTCCCTCTCAAAACTGTTACACTTCGGCGGGATGCATTAGATATCACAGAAGAAGATTACTACCAGACATTATACAAAGAATGTCAATTAGAATTCAACAGGTATGTTGAAGATGGCACCCTGATGAACTATTATGTTCATATATTGGAACTTATTACTCGATTGCGACAGGCTCTAGATCATCCATACCTTGTGGTTCATTCAAAATCTGGTGAAGCTCTATGTGACATTTGCAAATGGGTGGCAAAAGATCTTGTGGTTACCTCTTGTGGACATACCTTTTGTAAGGCTTGTTTGGAAGATTTTACTAAAATCTTGGGAAAATCTTTGTGCCCCACATGTTCACTCCCATTTACACCAAGGAAGATTTGTGGTGGTCTATTTGCAGAAGCAATGGGCTTTAAAACTTCAAGCATCTTAGGAAGAATTTCTCTAGGAAATTTTCCAACAAGCACCAAAATAGAAGCTCTGAAGGAGGAAATCAGGTTCATGGTTGAAATGGATGGTTCTGCAAAAGGCATTGTTTTCAGCCAGTTTACATCCTTCTTGGATTTGATAAGCTACTCCCTCCATCAGTCTGGAATCAATTGTGTTCAACTAGTTGGTAAAATGACTGCTACTGCAAAAGACGCTGCGGTAAAAAGGTTCAACGAGGACCCAGATTGCAAGATCTTTCTTACAAGCTTGAAATCTGGAGGTGCTGCACTCAATCTCCCAGTTGCATCATATGTTTTCTTAATGGAACCTTGGTGGAACCCTTTTGTTGAGCAGCAGGCATATGACCGAATTCATCGGATTGGTCAATATAAACCGGTTAGAGTCATAAAGTTTATAATAGAGAACACTATTGAGGAGAGGATTTTGGAGCTCCAAGAAAAGAAAGAAAGCTTATCAGAAGGGTAA 2256 0.418 MDEKTIDLTVGSELYLRIYVSLYTKHSGVLECAFYDNSDQLKGDDEQIVEDFNFTYMRRGKNKPRLQWEILEEENRTLVDSFEMQNDASHDNEEDIAETAEAPPEMLVPLLRYQKEWLGWALTQEESPCRGGILADEMGMGKTIQAIALVLAKRAINRSNAGTSSSSPTLVICPLAALKQWETEIIQCMPPGSVKVLVYHGARKRVTGQDFSGYDFVLTTYSTVEAECRCRVLLPNKVCDFCGKELDRENMNFHGRILCQKSYQGTRHPREMHDNGAGRNTRDRSSRKKQDKARTGSSKLNPDDAKPYEPERKLFLGSVRWERIILDEAHAIKSRNNSTTKAILALKSKYKWALTGTPLQNSMEEIYSLAIYPYAYFFCWWCDCKSLDYVHSASCPCIHGRHFCWWNKYVSRPLQMENHQNSRRARILLTQKVLKSIMLRRTKKSIAVDLGLPLKTVTLRRDALDITEEDYYQTLYKECQLEFNRYVEDGTLMNYYVHILELITRLRQALDHPYLVVHSKSGEALCDICKWVAKDLVVTSCGHTFCKACLEDFTKILGKSLCPTCSLPFTPRKICGGLFAEAMGFKTSSILGRISLGNFPTSTKIEALKEEIRFMVEMDGSAKGIVFSQFTSFLDLISYSLHQSGINCVQLVGKMTATAKDAAVKRFNEDPDCKIFLTSLKSGGAALNLPVASYVFLMEPWWNPFVEQQAYDRIHRIGQYKPVRVIKFIIENTIEERILELQEKKESLSEG* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0090 751 Pfam SNF2-related domain 125 369 IPR000330 GO:0005524|GO:0140658
Vvi10g0090 751 CDD SF2_C_SNF 602 729 - -
Vvi10g0090 751 SMART ring_2 526 565 IPR001841 -
Vvi10g0090 751 CDD DEXDc_SHPRH-like 110 441 - -
Vvi10g0090 751 Pfam Zinc finger, C3HC4 type (RING finger) 524 568 - -
Vvi10g0090 751 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 59 750 - -
Vvi10g0090 751 SMART helicmild6 635 718 IPR001650 -
Vvi10g0090 751 MobiDBLite consensus disorder prediction 264 309 - -
Vvi10g0090 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 748 IPR027417 -
Vvi10g0090 751 SMART ultradead3 106 390 IPR014001 -
Vvi10g0090 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 376 IPR014001 -
Vvi10g0090 751 ProSitePatterns Zinc finger RING-type signature. 541 550 IPR017907 -
Vvi10g0090 751 Pfam Helicase conserved C-terminal domain 605 718 IPR001650 -
Vvi10g0090 751 Coils Coil 731 751 - -
Vvi10g0090 751 Pfam SNF2-related domain 405 516 IPR000330 GO:0005524|GO:0140658
Vvi10g0090 751 ProSiteProfiles Zinc finger RING-type profile. 526 566 IPR001841 -
Vvi10g0090 751 Gene3D - 79 242 IPR038718 -
Vvi10g0090 751 Gene3D - 249 463 IPR038718 -
Vvi10g0090 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 441 IPR027417 -
Vvi10g0090 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 592 IPR013083 -
Vvi10g0090 751 Gene3D - 595 751 IPR027417 -
Vvi10g0090 751 SUPERFAMILY RING/U-box 519 574 - -
Vvi10g0090 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 600 751 IPR001650 -
Vvi10g0090 751 MobiDBLite consensus disorder prediction 266 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0090 Vvi-Chr10 780520 787296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0090 61 751 RAD5 or RAD16-like Gene Family AT1G05120 53.103 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi10g0090 SNF2_N 6.3e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0090 K15083 - vvi:100258816 1437.17