Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0070 ATGGACTGGACTAGGGGATGTACCCTTGGTCGTGGGTCCTCCGCCACCGTCTCCATCGCCACCTCCCACCTCTCCGGTGACATCTTCGCCGTGAAATCAACTGAGCTCTCCCAGTCCAAATTGCTCAAGAGGGAACAGAGGATTCTCTCCACAGTGAGGTCTGCTCACGTGATTGAATACAGAGGGTGGAATGTCACGTGCGAGAATGGGAAGCAGATGTACAATCTGTGCATGGAGTACGCCGCCGGCGGCACGCTCAAGCAGCGCGGCAGCCTGGGAGAGGCCGCCATCAGAGCCAACACGCGCGCCATTCTGCAGGGCCTTCAGTACCTACATTCCAATTGCATTGTCCACTGCGACATCAAAAGCGAGAATATTCTGATCACCGGCGAGGGGTTGAAGATCGGCGACCTGGGTTGCGCTAGACTCGCCGACGATTTCTCGGATTCGGTTTGTGGGACGCCGGCGTTCATGGCGCCCGAGGTGGCGCGCGGGGAGGAGCAGGGGTTCGCCGCTGATGTGTGGGCTCTTGGGTGCACGATCATTGAGATGGCCACCGGGCGGGCGCCGTGGACGGATGTTTCCGACCCGGTTTCGGCTGTTTACCGAATTGGGTTTTCCGGGGACGTGCCGGAGATTCCAGGGTGGGTGTCGGAGGAGGCTAAGGATTTTTTGGGGAAGTGTTTGGTGAGGGACCCTGTGAAGAGGTGGTCAGTTGGCGAGCTTCTTGGGCACCCTTTTGTCAACGAAGCTTGTGTTTTTTCCAAAGAAGTTTATGGGTCAAGTTCAAGCAGTCCGACAAGTGTGTTGGATCAAAGGTTCTGGAGCTCCTCCATTGAAGAACTGTACCCATTTCACAAGAAATCTTGGAATTCTCCAAGGGAGAGGATCCAGTTCTTGGCAAATTCAAATTCAAATTCAGGATTGCCCAATTGGGGATGGGATGAAAATTGGGTGACAGTGAGGAGTGGCAGCATGGAAGAACTAGAGGTGGTTTCTGAGGCTCCCACAGCCACCATGGCTTGGGCCGGTGAGGACCCTGGCATGGTAGGTTTCAGGGAACCCACACCCACTGCTGCAATGGACAGTTGTAATAGTTGTAATTTGTCACGTTTAAAATGTAAATGCATGAATTATGTTTTTTGTGGAAATCTTAATTTTGATTTTGTGGCAAATTTTAATGATAGTTCCAGTCTCATCATTAATCCATTCTCAGTAATGGAAAACAGAGGAGCTCAACCCCCAATTGAGCTCATGGTGGAAGCTACTTCGAATAGCACAAGCCAAGAATATCATAGCCACGAAAGCATCGTCTCCAAGCCACCATTGGAATCCTTCTTAACCAGGCTCCATGCTGGTTACTTCAGAATAAGCCTCTCTCTGGGTAGCCAAGCTTTGCTATGGAAGACTCTGAGTGAGGCCAAGAGCGACTTGCAACCTCTTCGGCATGTGTCCCAGATGCTCCCTCTGCTGGCTTTCCTCCTACTTTGGTATCTCTCGTTTTTCACTCTGATATCACTCTCTTTTCTCTACATCCTCAGATGCTTCTTTCACTTTCAGATGGTGAAGGCAGAGTTCTTACATCATGTAGGAGTGAACTACCTGTTTGCTCCTTGGATTTCTTGGCTTCTCCTGCTTCAGTCAGCTCCTTTGGTTGTCCCCAATACTCTTTCCTATCTAGTTCTCTGGTGGGTGTTTGCCATTCCAGTTCTGGCGCTCGATATAAAAATATATGGACAATGGTTCACCACAGAAAAGCGGTTTTTCTCCATGGTGGCGAACCCTACAAGCCAGATATCAGTGATTGGGAACTTGGCTGGAGCGCAGGCTGCTGCGCTGATGGGGTGGAAAGAGAGTGCAGTTTGCATGTTTACACTAGGCATGGTCCACTATCTGGTGGTTTTTGTCACTCTTTATCAGCGTCTGTCGGGTGGTGATCGGCTTCCAGTGATGCTCCGGCCTGTTTTCTTCCTGTTCTTTGCTGCGCCGAGCATGGCAAGCTTGGCTTGGAAGTCGATATCTGGGACTTTTGACACCACTTCAAAGATGCTTTTCTTCCTCTCACTCTTCCTCTTCACATCGCTGGCATGCAGGCCAACTCTTTTCAAGAAATCTATGAGGAAGTTCAATGTGGCATGGTGGGCTTACTCTTTTCCCCTCACCTTCCTTGCTCTAGCCTCTGCGGAATATGCACAGAAGGTGGAAGGTGAAATAGCTCCTGTTCTGATGCTCATGCTCATAGCCTTCTCTGTCTTGGTTTGCCTCAGCTTGATGCTCTTCACTGCACTCAACACTAAAGCCCTTCTCCTAGGAAATGATCCCATTCTGAAATTTTGCAAATCTCAAAACAAGGAGGGCTTGACCATGGTGTATAGGAATGGAGGGTAA 2388 0.5025 MDWTRGCTLGRGSSATVSIATSHLSGDIFAVKSTELSQSKLLKREQRILSTVRSAHVIEYRGWNVTCENGKQMYNLCMEYAAGGTLKQRGSLGEAAIRANTRAILQGLQYLHSNCIVHCDIKSENILITGEGLKIGDLGCARLADDFSDSVCGTPAFMAPEVARGEEQGFAADVWALGCTIIEMATGRAPWTDVSDPVSAVYRIGFSGDVPEIPGWVSEEAKDFLGKCLVRDPVKRWSVGELLGHPFVNEACVFSKEVYGSSSSSPTSVLDQRFWSSSIEELYPFHKKSWNSPRERIQFLANSNSNSGLPNWGWDENWVTVRSGSMEELEVVSEAPTATMAWAGEDPGMVGFREPTPTAAMDSCNSCNLSRLKCKCMNYVFCGNLNFDFVANFNDSSSLIINPFSVMENRGAQPPIELMVEATSNSTSQEYHSHESIVSKPPLESFLTRLHAGYFRISLSLGSQALLWKTLSEAKSDLQPLRHVSQMLPLLAFLLLWYLSFFTLISLSFLYILRCFFHFQMVKAEFLHHVGVNYLFAPWISWLLLLQSAPLVVPNTLSYLVLWWVFAIPVLALDIKIYGQWFTTEKRFFSMVANPTSQISVIGNLAGAQAAALMGWKESAVCMFTLGMVHYLVVFVTLYQRLSGGDRLPVMLRPVFFLFFAAPSMASLAWKSISGTFDTTSKMLFFLSLFLFTSLACRPTLFKKSMRKFNVAWWAYSFPLTFLALASAEYAQKVEGEIAPVLMLMLIAFSVLVCLSLMLFTALNTKALLLGNDPILKFCKSQNKEGLTMVYRNGG* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0070 795 FunFam S-type anion channel SLAH1 444 769 - -
Vvi10g0070 795 CDD TDT_SLAC1_like 449 761 - -
Vvi10g0070 795 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Vvi10g0070 795 Pfam Voltage-dependent anion channel 450 761 IPR004695 GO:0016020|GO:0055085
Vvi10g0070 795 FunFam Mitogen-activated protein kinase kinase kinase 17 2 296 - -
Vvi10g0070 795 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0070 795 CDD STKc_MAPKKK 2 248 - -
Vvi10g0070 795 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0070 795 PANTHER S-TYPE ANION CHANNEL SLAH3 433 783 IPR030183 GO:0006873|GO:0008308|GO:0016020
Vvi10g0070 795 Pfam Protein kinase domain 7 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0070 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Vvi10g0070 795 SUPERFAMILY Protein kinase-like (PK-like) 2 309 IPR011009 -
Vvi10g0070 795 Gene3D - 444 769 IPR038665 -
Vvi10g0070 795 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0070 Vvi-Chr10 645142 648890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0070 1 351 MAP Kinase Kinase Kinase AT5G55090 48.794 3.42e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi10g0070 SLAC1 1.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0070 - K20716 vvi:100853501 813.913