Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0069 ATGGACTGGACTAGGGGATGTACCCTTGGTCGTGGGTCCTCCGCCACCGTCTCCATCGCCACCTCCCACCTCTCCGGTGACATCTTCGCCGTGAAATCAACTGAGCTCTCCCAGTCCAAATTGCTCAAGAGGGAACAGAGGATTCTCTCCACAGTGAGGTCTGCTCACGTGATTGAATACAGAGGGTGGAATGTCACGTGCGAGAATGGGAAGCAGATGTACAATCTGTGCATGGAGTACGCCGCCGGCGGCACGCTCAAGCAGCGCGGCAGCCTGGGAGAGGCCGCCATCAGAGCCAACACGCGCGCCATTCTGCAGGGCCTTCAGTACCTACATTCCAATTGCATTGTCCACTGCGACATCAAAAGCGAGAATATTCTGATCACCGGCGACGGGTTGAAGATCGGCGACCTGGGTTGCGCTAGACTCGCCGACGATTTCTCGGATTCGGTTTGTGGGACGCCGGCGTTCATGGCGCCCGAGGTGGCGCGCGGGGAGGAGCAGGGGTTCGCCGCTGATGTGTGGGCTCTTGGGTGCACGATCATTGAGATGGCCACCGGGCGGGCGCCGTGGACGGATGTTTCCGACCCGGTTTCGGCTGTTTACCGAATTGGGTTTTCCGGGGACGTGCCGGAGATTCCAGGGTGGGTGTCGGAGGACGCTAAGGATTTTTTGGGGAAGTGTTTGGTGAGGGACCCAGTGCAGAGGTGGTCAGTTGGCGAGCTTCTTGGGCACCCTTTTGTCAACGAAGCTTGTGTTTTTTCCAAAGAAGTTTATGGGTCAAGTTCAAGCAGTCCGACAAGTGTGTTGGATCAAAGGTTCTGGAGCTCCTCCATTGAAGAACTGTACCCATTTCACAAGAAATCTTGGAATTCTCCAAGGGAGAGGATCCACTTCTTGGCAAATTCAAATTCAAATTCAGGATTGCCCAATTGGGGATGGGATGAAAATTGGGTGACAGTGAGGAGTGGCAGCATGGAAGAACCAGAGGTGGTTTCTGAGGCTCCCACAGCCACCATGGCTTGGGCCGGTGAGGACCCTGGCATGGTAGGTTTCAGGGAACCCACACCCACTGCTGCAATGGACAGTTGTAATAGTTTGTCACATGATTGTTCGGAAACTAGATGA 1128 0.5514 MDWTRGCTLGRGSSATVSIATSHLSGDIFAVKSTELSQSKLLKREQRILSTVRSAHVIEYRGWNVTCENGKQMYNLCMEYAAGGTLKQRGSLGEAAIRANTRAILQGLQYLHSNCIVHCDIKSENILITGDGLKIGDLGCARLADDFSDSVCGTPAFMAPEVARGEEQGFAADVWALGCTIIEMATGRAPWTDVSDPVSAVYRIGFSGDVPEIPGWVSEDAKDFLGKCLVRDPVQRWSVGELLGHPFVNEACVFSKEVYGSSSSSPTSVLDQRFWSSSIEELYPFHKKSWNSPRERIHFLANSNSNSGLPNWGWDENWVTVRSGSMEEPEVVSEAPTATMAWAGEDPGMVGFREPTPTAAMDSCNSLSHDCSETR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0069 375 SUPERFAMILY Protein kinase-like (PK-like) 2 308 IPR011009 -
Vvi10g0069 375 MobiDBLite consensus disorder prediction 350 375 - -
Vvi10g0069 375 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 328 - -
Vvi10g0069 375 CDD STKc_MAPKKK 2 248 - -
Vvi10g0069 375 MobiDBLite consensus disorder prediction 359 375 - -
Vvi10g0069 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Vvi10g0069 375 Gene3D Transferase(Phosphotransferase) domain 1 2 300 - -
Vvi10g0069 375 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0069 375 Pfam Protein kinase domain 7 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0069 375 FunFam Mitogen-activated protein kinase kinase kinase 17 2 296 - -
Vvi10g0069 375 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0069 375 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0069 Vvi-Chr10 641937 643242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0069 2 335 MAP Kinase Kinase Kinase AT5G55090 50.418 2.78e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi10g0069 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0069 K20716 - vvi:100853452 746.117