Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0065 ATGGCCTACACAGCACTTTTCCTAGTGCTTTCCTGCACTCTAGCCTACTACGCTTCAACTTTACAGGCTTACTCATCACTAGACTACACCCCTCAAACGTTCACAAGCTATATGCCTAGCAGTTCTAAGTCGTCCACTAAAAAAGTCATGAACCCAATAGACTCTTGCTGGCGCAGAAAGGCCAATTGGGCCTCTAATCGCCGCGCCTTGGCTGACTGCGCTGTAGGCTTTGGTAAAGGCGCAATGGGAGGAAAGTATGGCGCCATGTATGTAGTCACTACCCCTTCTGATGATCCGGTGAATCCCAAACCAGGCACACTTCGTTATGGTGTAATTCAGACTAAGCCGCTTTGGATCGTTTTTGCTAAGGACATGGTGATTACGCTGAAAAATGAGTTGATTATGAATAGTTTCAAGACTATTGATGGGAGGGGAGCGAAGGTGGAGATTGCTTACGGGCCGTGCATCACTATACAAGGTGTGAGCCATGTTATTATACATGGGATTAGTATTCATGACTGTAAGCCTGGGAAGTCTGGCCTTGTTAGGAGTACTACGATGCACGTTGGTCATCGCCTCGGCTCTGATGGCGATGCGATCAGTATATTCACTTCTTCGCATGTTTGGATTGACCATTGCTATCTCGCTAGCTGCACCGATGGCCTTATCGATGTTATTCATGCGTCTACTGCTATCACCATTTCTAACAACTACTTCTCTCACCATGATAAAGTAATGCTGTTTGGGCACGATGATCACTTCACTGCAGATAAAGTCATGAGTGTTACAGTCGCCTTCAACCATTTTGGCACTGGTCTAGTTCAAAGGATGCCAAGGGTTAGATTTGGCTATGCCCACCTTGCCAACAACAAGTATGATGAATGGGAGATGTATGCCATTGGTGGGAGTGCTAATCCAACCATCTTAAGCGAAGGGAACCACTTTACTGCTCCTGACAATGCCAACACCAAAGAGGTTACCAAGAGAGAGGTTAAAAGTGGTTGGAAGAATTGGAAATGGAGGTCCTCTAAGGATAAATTTGTGAATGGTGCATACTTTGTTCATCTGGATGGGGAAGCTGTGCCCCGCTTTACTCTCGATCCCAAGCATTTTCTGTTGCTGATGGTTCAATGGTTCCTGCTTTAA 1146 0.4599 MAYTALFLVLSCTLAYYASTLQAYSSLDYTPQTFTSYMPSSSKSSTKKVMNPIDSCWRRKANWASNRRALADCAVGFGKGAMGGKYGAMYVVTTPSDDPVNPKPGTLRYGVIQTKPLWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGLVRSTTMHVGHRLGSDGDAISIFTSSHVWIDHCYLASCTDGLIDVIHASTAITISNNYFSHHDKVMLFGHDDHFTADKVMSVTVAFNHFGTGLVQRMPRVRFGYAHLANNKYDEWEMYAIGGSANPTILSEGNHFTAPDNANTKEVTKREVKSGWKNWKWRSSKDKFVNGAYFVHLDGEAVPRFTLDPKHFLLLMVQWFLL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0065 381 Gene3D - 50 369 IPR012334 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Vvi10g0065 381 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Vvi10g0065 381 Pfam Pectate lyase 133 315 IPR002022 -
Vvi10g0065 381 SUPERFAMILY Pectin lyase-like 50 356 IPR011050 -
Vvi10g0065 381 SMART amb_all 124 321 IPR002022 -
Vvi10g0065 381 PANTHER PECTATE LYASE 18-RELATED 32 357 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0065 Vvi-Chr10 603713 605149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0065 29 372 Polysaccharide Lyase AT4G22080 68.946 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0065 K01728 - vvi:100245293 680.248