Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0052 ATGAGAAGCGATAGAAGAATTGTTGTTCCCTGCACCAAATGTAAATCAAAATTATATTGCATACAGTGCATCAAGCAATGGTATCCCAACATGTCAGAAGTAGAAATTGCAGAGCTTTGCCCGTTTTGCCGTAGAAATTGCAACTGTAACCTGTGCCTGCATTCCAGTGGGATCGTTAAGACGGTGAAGACTGATATCAGTGATGGTGAAAAGGTTCAGCATCTTCTGTATTTGATCAAGACACTTTTTCCTTATCTTAAACAAATTTATGAAGAGCAAACAGAGGAGATAGAGGTTGAGGCTAATATTCAAGGGATACCATCTTCTGGAATTACAATACCAGTGTCTTCATGCCCCAGTGATGAGCGTGTCTATTGCAACCATTGTGCAACTTCAATTGTTGATCTCCACCGAAGCTGCCCAAAATGTTGTTATGAGCTCTGCCTCAGCTGTTGCAAGGAGATTCGGAAGGGAAACCTTTTAAGGTGCACTGCAGTGGATTTCCAGTATGTGGAGAGAGGATTTGATTATATGCATGGCGAAGATCCTTTACCAGAATCCTATTATATGGGAACGGTTGGGAATGATGTTGAGCCATTGACTGAATGGAATGCCAATAAGGATGGAAGCATTATCTGTGCCCCAAAAGAAATGGGTGGATGTGGTGGTAGTTTATTGCAGCTCAAGCATATCCTCCCGGAAGACAGGATTTTAGATTTGAAAGAGAGAGCTGAACAAGTGATGATGAAATTTGGGACTGAACAAGCTAGGAACTGTTCGACAAATGGCTCTGAGATGGTGAAGAGAGCATCTTCTAGAGAAGGCACTGATGACAATTACTTGTACTGTCCAGCTTCACATGACATTTTAAAGGAGGAGGAATTTTTGAACTTCCAGAGGCATTGGGCTAAAGGCGAACCAGTGATTGTTTGTAATGTTCTAGAGCAGACAACTGGTTTAAGCTGGGAGCCCATGGTCATGTGGCGGGCACTTTGCGAAAACATGGATTCCAAGATGAGTTCGAAGATGTCAGAAGTGAAGGCCGAGGAATGCCTATCTAGCTGCCAGGTAGATATCAGTACACGCCAATTTTTCAAAGGCTACACAGAAGGAAGATCATATGATAATTTATGGCCTGAAATGCTGAAGCTAAAGGACTGGCCCCCATCTGATAAATTTGAGAATCTTTTGCCTCGCCACTGTGATGAGTTCATCAGCGCATTGCCATTTCAGGAATATACAGACCCTAGGGCTGGCTTCCTTAACCTTGCTGTAAAGTTGCCAAATACCATTCTCAAACCAGACTTGGGTCCAAAAACGTACATTGCTTATGGGATTGCTGAGGAGCTTGGCAGGGGGGATTCAGTAACTAAGCTTCACTGTGATATGTCAGATGCAGTGAATATTTTGACACACACTGCAGAGGTAGTTCTAGATGACAATCAACGCCTGGCAGTCAAAAGGTTGAAGAAGAAACACCAAGCCCAAGATAAGAGGGAAAATCTTGTTCCACCATGTCAGCAAGAGGAAGATTTGCCTATCTCTAGGATTACAGTAACAGAAAATGAGGATGAGGAAGAAGGGCCCTACTTTCCTGGTTTCCTTCCACCAGGGAAGACACAGAAAACCGGCAGTGCTCTGTGGGATATTTTCAGGAGGGAAGATGTGCCCAAACTACAGGACTACCTTAGAAAGCACTCCAAAGAATTTAGGCATGTGTTTTGTTCTCCTGTAAACAGGGTTGTTCATCCGATTCACGATCAATCATTCTATTTGACTTTGGAGCACAAGAAGAAACTCAAGGAGGAATATGGAATTGAACCTTGGACATTTGAACAAAGAATTGGTGAGGCAGTATTCATTCCTGCAGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTGGACTTCGTCTCTCCAGAAAATATCCATGAATGCATCAGGCTGACAGAGGAGTTCCGCCAACTTCCTAAGAACCACAGGGTCAGAGAAGACAAGCTCGAGATAAAGAAAATGATTGTATATGCAGTGGCTCAATCTCTTAAAGATTTCTACTTGCTGGCATCAGGCTGA 2088 0.432 MRSDRRIVVPCTKCKSKLYCIQCIKQWYPNMSEVEIAELCPFCRRNCNCNLCLHSSGIVKTVKTDISDGEKVQHLLYLIKTLFPYLKQIYEEQTEEIEVEANIQGIPSSGITIPVSSCPSDERVYCNHCATSIVDLHRSCPKCCYELCLSCCKEIRKGNLLRCTAVDFQYVERGFDYMHGEDPLPESYYMGTVGNDVEPLTEWNANKDGSIICAPKEMGGCGGSLLQLKHILPEDRILDLKERAEQVMMKFGTEQARNCSTNGSEMVKRASSREGTDDNYLYCPASHDILKEEEFLNFQRHWAKGEPVIVCNVLEQTTGLSWEPMVMWRALCENMDSKMSSKMSEVKAEECLSSCQVDISTRQFFKGYTEGRSYDNLWPEMLKLKDWPPSDKFENLLPRHCDEFISALPFQEYTDPRAGFLNLAVKLPNTILKPDLGPKTYIAYGIAEELGRGDSVTKLHCDMSDAVNILTHTAEVVLDDNQRLAVKRLKKKHQAQDKRENLVPPCQQEEDLPISRITVTENEDEEEGPYFPGFLPPGKTQKTGSALWDIFRREDVPKLQDYLRKHSKEFRHVFCSPVNRVVHPIHDQSFYLTLEHKKKLKEEYGIEPWTFEQRIGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECIRLTEEFRQLPKNHRVREDKLEIKKMIVYAVAQSLKDFYLLASG* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0052 695 SMART cupin_9 397 659 IPR003347 -
Vvi10g0052 695 FunFam Transcription factor jumonji domain-containing protein 278 668 - -
Vvi10g0052 695 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 689 IPR045109 GO:0032454|GO:0033169
Vvi10g0052 695 Gene3D Cupin 281 668 - -
Vvi10g0052 695 Pfam JmjC domain, hydroxylase 541 642 IPR003347 -
Vvi10g0052 695 SUPERFAMILY Clavaminate synthase-like 294 679 - -
Vvi10g0052 695 ProSiteProfiles JmjC domain profile. 416 659 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0052 Vvi-Chr10 463650 466657 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi10g0052 JmjC 5e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0052 K15601 K21989 vvi:100250303 1438.32