Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0049 ATGTTAGTGTTTTCTGTGTTGATATTTCTCAGTATTGGAGTAGAATCTAAGTGTAGCAGAGGCTGTGATCTTGCTTTAGCTTCATACAATATATGGAATGGTACAACTCTCAGTTTTATAGCCACCGCCTTCTCCACTTCTATTTCTGAAATTCAAAGCTTCAATCCTCAAATAAATGATATAGATTTGATCATAGTTGATACAAGATTGAATATCCCCTTCTCCTGCAGTTGCATTGATGGGGAGTTTCTGGGTCATACTTTCTTCTACTCTGTTGACAGTAATGATACCTACAATATTATTGCTAGGACTTTCTATGCAAACCTTACTACTGTTGAATGGTTAGAGAGATTTAATAGGTATGAAGCCACTGAGATACCTGTCAACGCCATAATAAATGTTACTGTGAATTGTTCTTGTGGAAATAGTAGAGTCTCCAAGAAGTATGGGTTGTTTGTGACCTACCCTCTTCAGCCTGGTGAGAGCTTGTCCTCTATTGCCAATGAGTCTGGACTTCCTTCCAAGTTGTTGCAGGATTACAACCCTGGAGTTGATTTCAGCCTTGGTAGTGGGTTGGTGTTTATCCCTGGAAAAGCAGGAATCTCAGTTGGAGTGATTGCTGGCATATCTGTGGCTGGAGTAGCAGGGTCTTTGCTCTTGGCATTTGTTCTATATGTTGGAATTTATAAGAGGAAGATGGGAAAGGCACCACTTCTCCCAGCAGCATTTGAAGACCAACATATGCAACCTGGACAGGGTTATGGAAGTACCTTGGAAAAAACTTCAGATTCAGTTGCTCTGGTTGCTGCTGTTTCTCTGGAGCTTGTTGGTATAACTGCAGACAAATCAGTGGAGTTCACATATGAAGAGCTGGCCAAGGCTACAAATAACTTTAGTGCAGCTAGTAAGATTGGCCAAGGCGGTTTTGCATTAGTTTACTATGCGGAGCTGCAAGGCCAGAAGGCTGCAATCAAGAAGATGGACATGCAGGCATCAAAGGAGTTCCTTGCTGAACTAAAAGTTCTAACACATGTCCATCACTTCAACCTGGTTCGCCTGATAGGATATTGTGTTACGGGTTCCTTATTCATCGTCTATGAGTACATTGAGAATGGCAACTTAAGCCAACATTTGCGTGGTTCAGGGAATGATCCATTGCCATGGTCTACTAGGGTCCAAATCGCCCTTGATGCAGCCAGAGGGCTTGAATATATTCATGAGCACACTGTCCCTGTGTATGTACATCGTGATATTAAATCAGCGAACATTTTGATAGACAAAAACTTGCGTGCAAAGGTTGCAGATTTTGGATTAACCAAACTGACTGTAGCTGGAAGTTCTTCATTGCCCACTCGTCTTGTTGGTACATTTGGATACATGCCTCCAGAATATGCTCAATTTGGTGCAGTTACCCCCAAGATAGATGTATATGCTTTTGGGGTTGTCCTATATGAACTTATATCTGCCAAAGAAGCCATTATCAAGACAAATGGATCTACTACCACTGAAGCAAGAGGACTTGTTGCCTTGTTTGAGAATGTTCTCAGTTGGCCGGATCTGAGAGAAGATTTCTGTGAACTTATTGACCACAGACTTGGCAATGACTACCCACTTGACTTAATTTGGAAGATGGCCCAGCTTGCCAAAGCTTGCACACAAGAAGATCCTCAACTGAGACCAAGCATGCAGTCAGTAGTTGTCGCACTAATGACGCTTTCATCCTCGACTGAAGATTGGGATGTCAGATCCGTGTATGAAAACAAAGCTCTAGTGAATCTGATGTCAGGAAGATAG 1794 0.422 MLVFSVLIFLSIGVESKCSRGCDLALASYNIWNGTTLSFIATAFSTSISEIQSFNPQINDIDLIIVDTRLNIPFSCSCIDGEFLGHTFFYSVDSNDTYNIIARTFYANLTTVEWLERFNRYEATEIPVNAIINVTVNCSCGNSRVSKKYGLFVTYPLQPGESLSSIANESGLPSKLLQDYNPGVDFSLGSGLVFIPGKAGISVGVIAGISVAGVAGSLLLAFVLYVGIYKRKMGKAPLLPAAFEDQHMQPGQGYGSTLEKTSDSVALVAAVSLELVGITADKSVEFTYEELAKATNNFSAASKIGQGGFALVYYAELQGQKAAIKKMDMQASKEFLAELKVLTHVHHFNLVRLIGYCVTGSLFIVYEYIENGNLSQHLRGSGNDPLPWSTRVQIALDAARGLEYIHEHTVPVYVHRDIKSANILIDKNLRAKVADFGLTKLTVAGSSSLPTRLVGTFGYMPPEYAQFGAVTPKIDVYAFGVVLYELISAKEAIIKTNGSTTTEARGLVALFENVLSWPDLREDFCELIDHRLGNDYPLDLIWKMAQLAKACTQEDPQLRPSMQSVVVALMTLSSSTEDWDVRSVYENKALVNLMSGR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0049 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vvi10g0049 597 ProSiteProfiles Protein kinase domain profile. 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0049 597 CDD LysM 153 185 IPR018392 -
Vvi10g0049 597 ProSiteProfiles LysM domain profile. 27 72 IPR018392 -
Vvi10g0049 597 Gene3D LysM domain 22 79 IPR036779 -
Vvi10g0049 597 FunFam PTI1-like tyrosine-protein kinase 3 369 583 - -
Vvi10g0049 597 SUPERFAMILY Protein kinase-like (PK-like) 280 569 IPR011009 -
Vvi10g0049 597 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 583 IPR044812 GO:0019199|GO:0045087
Vvi10g0049 597 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Vvi10g0049 597 Pfam Protein tyrosine and serine/threonine kinase 301 568 IPR001245 GO:0004672|GO:0006468
Vvi10g0049 597 Gene3D Phosphorylase Kinase; domain 1 283 368 - -
Vvi10g0049 597 Pfam LysM domain 158 184 IPR018392 -
Vvi10g0049 597 Pfam LysM domain 34 73 IPR018392 -
Vvi10g0049 597 Gene3D Transferase(Phosphotransferase) domain 1 369 591 - -
Vvi10g0049 597 SMART LysM_2 89 135 IPR018392 -
Vvi10g0049 597 SMART LysM_2 154 204 IPR018392 -
Vvi10g0049 597 SMART LysM_2 28 73 IPR018392 -
Vvi10g0049 597 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0049 597 FunFam LysM receptor kinase 2 277 368 - -
Vvi10g0049 597 ProSiteProfiles LysM domain profile. 153 196 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0049 Vvi-Chr10 423065 426968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0049 2 597 Receptor kinase-like Gene Family AT3G21630 55.008 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi10g0049 PK_Tyr_Ser-Thr 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0049 - K13429 vvi:100262323 1143.26