Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0048 ATGGTCATTTCATCAAACAGCAGGAACGCAATTCAAATACTTGCCTTTGGATTTCACTTTCTCGTTCTCCTCTGTTCCAAGGCCAATGCCAAGTGCTCCCGCGGCTGTGATCTCGCCCTGGCTTCATACTACGTGTGGGATGGCTCAAACCTCACCTACATTAGAAAAATCTTTGGCCGCGAAATCTCGGAAATTCTCAAGTACAATCCCCAAATCGAAAACCAAGACAGCATCGACACTGGCTCCAGAATCAACGTGCCGTTCCGGTGCGATTGCCTGAACGGCGATTTCCTGGGCCACACCTTCGAGTATACGACTCAATTTGGAGATACGTATGATAGGATTGCAGAGAGGGCATTTTCGAACCTCACTACTGAGGATTGGGTTCACAGAGTGAATGAGTATCCACCGACTCGGATACCGGATGATGTTCAGATTAATGTGACGGTGAACTGCTCCTGCGGCAACCGGAGAGTGTCGATGAAGTATGGGTTATTTGCGACGTATCCTCTCAGGGACGGTGAGAATTTGTCGACCGTGGCGGCGGCGGCTGGCATCACCGACGATTTGGTGCGGCGGTATAATCCGGCGGCCGATTTTAGTGCTGGGACTGGGCTAGTGTTTGTGCCGGCCAAAGAATCGAAGTGTAGCAGAACTTGCGATCTTGCGTTGGCTTCGTATAATCTATGGAAGGGTGTAGATCTCAATTTCATAGCTACTACCTTTTCAAGAGATGTTTCTGAAATTCAAAGTTTCAATCCTCAGATAACCAACATAGATCTCATTATAGCTGGTGAAAGAGTGAACGTGCCCTTCTCATGTGGTTGCATTGACAGGGAGTTTCTTGGTACAACATTTGTCTACTCGGCTAAGCAAAATGATACCTATAGTATCATTGCTGAGAAATACTTCGCAAACCTCACTACTGTTGAATGGTTGCAGAGATTTAATACCTATGCACCTACCAATATACCCATCGATGCTCCCATAAATGTCACTGTGAATTGTTCTTGTGGAAATAGTAGTGTCTCCAAGGATTATGGGTTGTTCGTGACCTACCCTCTTGAGCCTGGTGAGAACTTGTCCACCATTGCCAATCAGTCTGGACTTCCTCCCCAGTTGTTGCAGGATTATAACCCTGATTCCGATTTCAGCCGTGGGAGTGGGTTGGTTTTTATTCCTGGAAAAGATCAAAATGAAACCTATCCACCACTGAAGTTAAGCAACAGCGCAGGGATCTCCAGTGGAGTCATTGCTGGCATATCTGTGGCTGGAATTGTGGGCTCTTTGCTTTTTGCCTTTTTTCTGTTTGCTCGAATTTGTAAAAGGAAGAAGGTGAAAAAAGTACTGTTTTTCCCGGCAGCATCTGAACAACAATATATGCAACATAGACAAGCTCATGGAAGTGCCTCAGAAGAGACTTCAGATTCAGCTGCTCTTGTTGGTGCTGCTTCTCTGGGGCTCGTAGGTATAACTGTGGACAAATCTGTGGAGTTTTCATATGAAGAGCTGGCCACAGCTACAGACAACTTCAGCTTGGCTAATAAGATCGGCCAAGGTGGCTTTGGATCTGTCTACTATGCAGAGCTGAGAGGCGAGAAAGCTGCAATCAAGAAGATGGACATGCAAGCATCAAAGGAGTTCCTTGCTGAACTGAAGGTTCTAACACATGTTCATCACCTGAACCTGGTGCGCTTAATAGGATATTGTGTCGAGGGTTCCTTATTCCTAGTCTACGAATTCATTGATAATGGAAATTTAAGTCATCATTTGCGTGGTTCTGGGAAGGATCCATTGCCATGGTCCAGTAGGGTGCAAATTGCCCTTGATTCAGCAAGAGGGCTTGAGTATATTCATGAGCATACAGTTCCTGTGTATATTCATCGTGATATTAAACCAGCAAACATTTTGATAGACAAAAAATTTCGTGCAAAGGTTGCAGATTTTGGGTTAACAAAACTAACTGAAGTTGGAAGTGCTTCAATACCTACACGTCTTGTGGGTACATTTGGATACATGCCTCCAGAATATGCCCAATATGGTGATGTTTCCCCTAAGATAGATGTATTCGCTTTTGGAGTTGTCCTTTATGAACTCATATCTGCCAAGGAAGCCATTGTCAAGACAAATGAACCTATTATGCCCGAGTCAAAAGGACTTGTTGCTTTGTTTGAGGATGTTCTCAGCCAGCCTGATCCAAGAGAAGATTTTGTTAAGCTTATAGACCAGAGGCTTGGAGATGACTACCCTCTTGACTCAATTTGGAAGATGGCCCATCTTGCCAAAGCTTGCACACAGGAAAATCCTCAGTTGAGACCAAGCATGAGGTCAATTGTCGTTGCACTAATGACACTTTCATCATCAACCGAAGATTGGGATGTTGGGTCCTTCTATGAAAATGAGGCTCTGATGAATCTAATGTCAGGAAGGTAG 2433 0.4484 MVISSNSRNAIQILAFGFHFLVLLCSKANAKCSRGCDLALASYYVWDGSNLTYIRKIFGREISEILKYNPQIENQDSIDTGSRINVPFRCDCLNGDFLGHTFEYTTQFGDTYDRIAERAFSNLTTEDWVHRVNEYPPTRIPDDVQINVTVNCSCGNRRVSMKYGLFATYPLRDGENLSTVAAAAGITDDLVRRYNPAADFSAGTGLVFVPAKESKCSRTCDLALASYNLWKGVDLNFIATTFSRDVSEIQSFNPQITNIDLIIAGERVNVPFSCGCIDREFLGTTFVYSAKQNDTYSIIAEKYFANLTTVEWLQRFNTYAPTNIPIDAPINVTVNCSCGNSSVSKDYGLFVTYPLEPGENLSTIANQSGLPPQLLQDYNPDSDFSRGSGLVFIPGKDQNETYPPLKLSNSAGISSGVIAGISVAGIVGSLLFAFFLFARICKRKKVKKVLFFPAASEQQYMQHRQAHGSASEETSDSAALVGAASLGLVGITVDKSVEFSYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEFIDNGNLSHHLRGSGKDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDIKPANILIDKKFRAKVADFGLTKLTEVGSASIPTRLVGTFGYMPPEYAQYGDVSPKIDVFAFGVVLYELISAKEAIVKTNEPIMPESKGLVALFEDVLSQPDPREDFVKLIDQRLGDDYPLDSIWKMAHLAKACTQENPQLRPSMRSIVVALMTLSSSTEDWDVGSFYENEALMNLMSGR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0048 810 FunFam LysM receptor kinase 2 490 581 - -
Vvi10g0048 810 Pfam Protein tyrosine and serine/threonine kinase 513 781 IPR001245 GO:0004672|GO:0006468
Vvi10g0048 810 Gene3D Phosphorylase Kinase; domain 1 496 581 - -
Vvi10g0048 810 Gene3D Transferase(Phosphotransferase) domain 1 582 800 - -
Vvi10g0048 810 SMART serkin_6 511 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0048 810 SUPERFAMILY Protein kinase-like (PK-like) 492 782 IPR011009 -
Vvi10g0048 810 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Vvi10g0048 810 FunFam PTI1-like tyrosine-protein kinase 3 582 796 - -
Vvi10g0048 810 CDD STKc_IRAK 517 779 - -
Vvi10g0048 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Vvi10g0048 810 ProSiteProfiles Protein kinase domain profile. 511 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0048 810 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 213 796 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0048 Vvi-Chr10 414417 422165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0048 208 810 Receptor kinase-like Gene Family AT3G21630 59.054 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi10g0048 PK_Tyr_Ser-Thr 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0048 - K13429 vri:117923989 1012.68