Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0044 ATGGAAGAGATGAACTGCATCTTGTGTTGCAGATTGACAGGTGACAACACGGTGGAGAAGAAGAAGAGCATTGAGGAAAATAAAGACGATAAAACAGTAGCCTCATTTGTTAAAGACATCGCATGGAAATCTGCAGGTACTGACAAGAAGGGGACTCTAACCAAAGAGATACTAAAAGCCGGAAACCCAAAAATTTCTGCCCAAGTTTTCACATTCCGTGAACTGGCAACTGCAACAAGCAACTTCAGGGCTGAGTGTTTGTTGGGAGAAGGTGGATTTGGGAGGGTCTACAAAGGGCATATCAACAATCAAGATGTGGCTGTTAAGCAGCTTGATAGGAATGGCGTACAGGGAAACCGAGAATTCCTGGCAGAGGTTCTGATGTTAAGCCTTGTTCACCACCCCAACCTTGTGAATCTGATGGGCTATTGTGCTGAAGGGGATCAGAGAATTTTAGTATATGAATACATGCCCAATGGATCTCTGGAAAATCTCCTCTTTGATTTGCCTCCAAATCAGGAGCCTCTGGATTGGATTACCAGGATGAAGATAGCTGAAGGGGCAGCTAAAGGGCTAGAATTCTTGCATGAAGGTGCCAACCCACCAGTGATTTATCGCGACTTCAAAGCATCTAATATATTGTTGGATGAGGAATTCAATCCCAAACTATCTGATTTTGGACTTGCTAAGCTGGGCCCAACAGGAGGCCAGGACCATGTGTCTACCAGAGTGATGGGAACCTATGGCTACTGTGCACCAGAGTATGCATTGACAGGCAAGCTGACCACCAAGTCTGATGTGTACAGCTTTGGGGTAATGTTTCTTGAGATGATCACTGGTAGGAGAGTTATTGACACTACTAGACCAACTGAGGAGCAGAACCTGATTTCTTGGGCAGCCCCACTGTTCAGAGACAAGAAGAAATTTACACTGATGGCTGACCCATTGCTTGAAGGGAAGTACCCGGTAAAGAGTCTCTATCAAGCTCTTGCAGTTGCAGCCATGTGTCTCCAAGAAGAAGCTAGCACCAGGCCTTTGATCAGTGATGTTGTAGCTGCTCTTGAGTTTCTAGCTAGACCAAAAGCTGTTTAG 1092 0.4542 MEEMNCILCCRLTGDNTVEKKKSIEENKDDKTVASFVKDIAWKSAGTDKKGTLTKEILKAGNPKISAQVFTFRELATATSNFRAECLLGEGGFGRVYKGHINNQDVAVKQLDRNGVQGNREFLAEVLMLSLVHHPNLVNLMGYCAEGDQRILVYEYMPNGSLENLLFDLPPNQEPLDWITRMKIAEGAAKGLEFLHEGANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGGQDHVSTRVMGTYGYCAPEYALTGKLTTKSDVYSFGVMFLEMITGRRVIDTTRPTEEQNLISWAAPLFRDKKKFTLMADPLLEGKYPVKSLYQALAVAAMCLQEEASTRPLISDVVAALEFLARPKAV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0044 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vvi10g0044 363 Gene3D Phosphorylase Kinase; domain 1 55 156 - -
Vvi10g0044 363 Pfam Protein kinase domain 86 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0044 363 FunFam Serine/threonine-protein kinase PBS1 157 363 - -
Vvi10g0044 363 PANTHER OS07G0668900 PROTEIN 28 361 - -
Vvi10g0044 363 FunFam Serine/threonine-protein kinase CDL1-like 53 156 - -
Vvi10g0044 363 ProSiteProfiles Protein kinase domain profile. 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0044 363 PIRSF ILK 43 361 - -
Vvi10g0044 363 Gene3D Transferase(Phosphotransferase) domain 1 157 362 - -
Vvi10g0044 363 SUPERFAMILY Protein kinase-like (PK-like) 64 357 IPR011009 -
Vvi10g0044 363 CDD STKc_IRAK 88 355 - -
Vvi10g0044 363 ProSitePatterns Protein kinases ATP-binding region signature. 88 109 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0044 Vvi-Chr10 394011 396081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0044 4 358 Glycoside Hydrolase AT3G07070 61.644 5.64e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi10g0044 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0044 - - vvi:100264109 731.095