Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0034 ATGGACGGAGACAGGTTCGTAGTATCGGCAAGGGAAAACCCTAGAACGCTGGGGTTTGCCCCGGAGCGCGGTCCCGGAGGCAGCGCTACCGCCACCGCGAAGCCAATGTCCAATGAAATCTCCCAAAAGCCACTGGTCCCGATCGTCGACCGATTCAAGGCTCTGCTAAAGCAGCGGGAGGACGAACTTAGGGTTTTGTCTGGAGACGACGTCCCGCCGCCGACTACTGAGGAAATTGTGCGGCTTTACGAGATTGTGCTATCGGAACTCATCTTCAATTCGAAACCCATCATTACCGATCTCACGATTATTGCCGGAGATCACAAGGAGCACGCTGATGGTATTGCCGATGCAATTTGTGCTCGAATTGTCGAGGTCTCAGTTGAGCAAAAACTACCTTCTTTATATCTGTTGGATAGTATTGTCAAGAACATTGGTCGGGACTATATAAAGCACTTCTCCTCCCGTCTACCTGAGGTTTTCTGTGAGGCATACAGGCAAGTTCACCCTAACCTTTATACTGCCATGCGACATCTGTTTGGCACTTGGTCTGCGGTGTTCCCCCCATCTGTCCTACGTAAGATTGAAGCTCAACTGCAATTTTCACCCACACTAAACAACCAATCATCAGGCATGGCTTCGTTGAGAGCCTCTGAATCTCCTCGGCCAACTCATAGTATACATGTCAATCCAAAGTACTTGGAAGCAAGACATCAGTTTGAACATTCACCCGTTGATAGTAACATGCAGCATTCACGAGGAACTTCCTCAACTCTAAAGGTTTATGGGCAAAAGCCTGCCATTGGATATGATGAGTATGATTCTGGTCATACAGAAGTTATATCCTCACAAGCCAGAGCCCAAAGGTTGAACTCAACTGGAAGTGTGGGCCGGACACCATTTGCTCTTGGCGCTGATAAGCTGCTTCCCTCTTCAACTGCTAGAGTTGCAAAATCGACCTCTCCAAGAATTGGCACTGCTGGGTCTTCATCTCCTCCAGCTGAGAAGTTTTCAATGGATAATTCTCCCAGAAGAGTTGTTGAAAGAGCTTCTCCATCTCATCGTGGATTTGAATATGGACTTGTCAGATCGATGGGCAGGGATGAGGAGACAAGTGACAGGCAGAGAAAACACTGGTCCAATGATAGGTTTGAAACTTCTGCTGCGCACAACCTTAGTAATGGACGTGAGCGTCAAGGACTGAGAGCGTTAATTGATGCATATGGAAATGACAGAGGGCAAAGAACTTTAAATGATAAGCCTCCAAAGGTTGGACACCTGGATATGAATGGCACAGACAATAAGGTGCCTAAGAAAGCATGGCAGAATACTGAAGAGGAAGAGTATGATTGGGAAGATATGAACCCAACTTTAGCCAACCGCAGACAGTGTAATAATATCTTGCAATCATCAGTTTCACCTTTTGGAAGCTTTAGGACAAGACCTGGCTCTGGGGCACTTGGTGCGGCCCCACTGGAGTCTGATTTCAATAGGAGCAAATGGTCTGGTCAGGCACAGCTTTCTATGGTGGATGATTCTCCTGTTATTGCTGAAGATGTAGTTCCTACCACCAGTTTAGGCCGAGGATCAATAAGTAAGCCTGGATTTGGAAATGAAACAAAATTTCATGGTTCTCACTATCCTCAAGAATCCTGGAATTTGGTGCACCGTGTACCTCAGTCTTCACAACACAACCGTAATGCCAAAGGAAGAGGAAAGAATTTCAATACACCCTTTTTGGGGAGTGGAATATCGTCTTCAGCTGCCGAGACAATTTCTCCTCTTATTAGTAATATTCCAGATGCTGATGCACAACTTCGTAGACTCCCTACTGTTGCATCAAGAATGGGTTCTTCAAGTCTCAACTCTATGAATGTGGAGGTTCAGTCAGCTGCTGCACCTGCATCAACTGGAATGTGGCCTCCAGTAAATGTGCACAAAACTCACCTCCCTCCTTTACTGTCCAATCTTCCACAAACAAAACAAATTAGGAATCAGTTCAATTTGATGAATGCTACTACTGCAGTTGTGAATCAAGATCCAAATAAGTCTTTGTTTTTACCTGAGTTAGATAGTAAGCTGCCTCAAATGGCTAATCGGCAGGCCGGATCAATTCCTTTAAATGGGAAAAACCAGACACAAGTCACTCGTTTACAACCACAGTTTTTGCCACAGGAGACTCATGGAAATTTTGTTCCATCTACCACAGCTCCTGTGTCATCATATTCAGTGGCACCTCCCTTGAACCCTGGATATACCCCACAAGGGCATGCTGCTGCTACAAGTACCATTTTGCTGAATCCAGTACCTGGTGTCCATTCGTCTATTCCAATCCACAATATCTCAAACAGCTCTGTGCATTTTCAGGGGGGAGCCTTGCCACCTCTACCCCCAGGTCCTCCTCCTGCCACATCACAAATGATAAATATACCTCAGAATACAGGTCCCATTGTCTCTAACCAACAACCTGGAAGTGCATTATCGGGTCTGATTAGTTCTCTCATGGCCCAAGGTTTGATCTCATTGGCAAAACAACCCACGGTTCAGGATTCTGTTGGAATTGAGTTTAATGTTGACCTCCTTAAGGTGCGCCATGAGTCTGCAATAAGTGCTCTATATGGTGATATGTCAAGACAGTGCACAACATGTGGTCTTCGATTCAAGTGCCAAGAAGAGCACAGTAGTCATATGGATTGGCATGTGACCAAGAACCGGATATCTAAAAACCGCAAACAGAAGCCTTCTCGCAAATGGTTTGTGAGTGCCAGTATGTGGCTTAGTAGTGCAGAGGCATTGGGCACTGATGCAGTTCCTGGGTTTTTGCCCACTGAGACAATTGCGGAAAAGAAGGATGATGAAGAACTGGCTGTTCCTGCTGATGAGGATCAGAATGTTTGTGCATTGTGTGGAGAGCCTTTTGATGATTTTTATAGTGACGAGACTGAGGAATGGATGTACAAAGGCGCTGTCTACTTGAATGCACCGGAGGGATCAGCAGCAGGCATGGATAGGTCACAGTTAGGTCCCATAGTGCATGCCAAATGCAGATCTGAGTCTAATGTGGTTTCCCCTGAAGATTTTGGACAAGATGAAGGGGGAAATATGGAAGAGGGTAGTAAGAGAAAAAGGATGCGAAGATAG 3141 0.4597 MDGDRFVVSARENPRTLGFAPERGPGGSATATAKPMSNEISQKPLVPIVDRFKALLKQREDELRVLSGDDVPPPTTEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKEHADGIADAICARIVEVSVEQKLPSLYLLDSIVKNIGRDYIKHFSSRLPEVFCEAYRQVHPNLYTAMRHLFGTWSAVFPPSVLRKIEAQLQFSPTLNNQSSGMASLRASESPRPTHSIHVNPKYLEARHQFEHSPVDSNMQHSRGTSSTLKVYGQKPAIGYDEYDSGHTEVISSQARAQRLNSTGSVGRTPFALGADKLLPSSTARVAKSTSPRIGTAGSSSPPAEKFSMDNSPRRVVERASPSHRGFEYGLVRSMGRDEETSDRQRKHWSNDRFETSAAHNLSNGRERQGLRALIDAYGNDRGQRTLNDKPPKVGHLDMNGTDNKVPKKAWQNTEEEEYDWEDMNPTLANRRQCNNILQSSVSPFGSFRTRPGSGALGAAPLESDFNRSKWSGQAQLSMVDDSPVIAEDVVPTTSLGRGSISKPGFGNETKFHGSHYPQESWNLVHRVPQSSQHNRNAKGRGKNFNTPFLGSGISSSAAETISPLISNIPDADAQLRRLPTVASRMGSSSLNSMNVEVQSAAAPASTGMWPPVNVHKTHLPPLLSNLPQTKQIRNQFNLMNATTAVVNQDPNKSLFLPELDSKLPQMANRQAGSIPLNGKNQTQVTRLQPQFLPQETHGNFVPSTTAPVSSYSVAPPLNPGYTPQGHAAATSTILLNPVPGVHSSIPIHNISNSSVHFQGGALPPLPPGPPPATSQMINIPQNTGPIVSNQQPGSALSGLISSLMAQGLISLAKQPTVQDSVGIEFNVDLLKVRHESAISALYGDMSRQCTTCGLRFKCQEEHSSHMDWHVTKNRISKNRKQKPSRKWFVSASMWLSSAEALGTDAVPGFLPTETIAEKKDDEELAVPADEDQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAPEGSAAGMDRSQLGPIVHAKCRSESNVVSPEDFGQDEGGNMEEGSKRKRMRR* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0034 1046 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Vvi10g0034 1046 Pfam CID domain 89 194 IPR006569 -
Vvi10g0034 1046 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 72 1031 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vvi10g0034 1046 SUPERFAMILY ENTH/VHS domain 75 206 IPR008942 -
Vvi10g0034 1046 MobiDBLite consensus disorder prediction 313 337 - -
Vvi10g0034 1046 Gene3D - 73 200 IPR008942 -
Vvi10g0034 1046 MobiDBLite consensus disorder prediction 12 34 - -
Vvi10g0034 1046 ProSitePatterns Zinc finger C2H2 type domain signature. 880 900 IPR013087 -
Vvi10g0034 1046 CDD CID_Pcf11 80 200 IPR047415 -
Vvi10g0034 1046 MobiDBLite consensus disorder prediction 412 440 - -
Vvi10g0034 1046 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Vvi10g0034 1046 MobiDBLite consensus disorder prediction 313 351 - -
Vvi10g0034 1046 MobiDBLite consensus disorder prediction 1018 1046 - -
Vvi10g0034 1046 SMART 558neu5 82 200 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0034 Vvi-Chr10 318130 327913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0034 30 1045 C2H2 Transcription Factor Family AT4G04885 43.872 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0034 K14400 - vvi:100255600 2094.32