Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0032 ATGTTTCAACCAAATATGTTCGACAGTCACCATCATCTACTAGATATGCCCCACAAAACCCCCGAAAGTGAAATGGGGAAAATACGAGACGAAGAATTCGAGAGCAAATCAGGAACAGAAAACATGGACGCCCCTTCTGGCGATGATCAAGATCCCAACCAGCGCCCCAAAAAGAAGCGGTACCATCGCCACACTCAGCATCAAATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGGCCCAACATGAACGCCATGAGAACTCAAATCTGAGGGCTGAGAACGAAAAGCTCCGAGCTGAGAACATAAGGTACAAAGAAGCCCTCAGCAACGCGACATGTCCTCACTGCGGAGGCCCAGCTTCTATTGGCGAGATGTCATTTGATGAGCAGCATTTGAGGATCGAAAATGCTCGGCTCAGGGATGAGATTGATAGGATTTCTGGGATTGCAGCCAAGTATGTTGGGAAGCCCATGGTTTCATATCCTCATCTTTCTACCCACACATCATCCCGGTCCCTCGATCTTGGGGTTGGGAATTTTGGGGCGCAATCAGGCATAGTAGGGGACATGTACGGAGGTGGTGATCTCCTTAGATCAGTCTCGCTGCCTACTGAGGCAGATAAACCGATGATTGTTGAGCTTGCTGTTGCAGCAATGGAAGAACTAATCCGAATGGCCCAGGCTGGGGAACCCTTATGGATTCCCACCTCTGACAACTCTACTGAGATTCTAAGTGAAGATGAATACCTGAGGACTTTCCCCAGGGGAATTGGGCCAAAACCCTTGGGGTTAAAATCTGAAGCTTCCAGGGAAACTGCAGTGGTAATAATGAACCATATCAGCCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAACTATTTTGTTAGGTACTGCAAGCATCATCCCGATGGGACTTGGGCAGTTGTTGATGTTTCATTGGATAACTTACGCTCTGGTCCAATAACAAGAAATCGAAGAAGACCATCTGGTTGTTTGATCCAAGAGTTACCCAATGGTTACTCCAAGGTCATATGGGTCGAACATGTAGAGGTGGATGATAGAGCTGTTCACAATATATACAGACCTCTAGTAAACTCAGGTCTTGCATTTGGAGCAAAGCGCTGGGTGGCTACCCTAGATCGCCAATGCGAACGTCTAGCAAGTGCCATGGCCAGCAACATTCCTGCAGGAGATGTTGGTGTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATGGACAACACTATCAGGCAGCGGGGCTGATGATGTAAGGGTCATGACCAGAAAGAGTATGGATGATCCTGGCAGGCCTCCTGGTATTGTACTAAGTGCTGCGACTTCCTTCTGGATTCCAGTTCCACCGAAACGAGTATTTGATTTTCTTCGTGCTGAGAACTCCCGAAGTGAGTGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCATGAATGTGGTCTTAAGCGGTGGGGACCCAGATTATGTTGCCCTCTTGCCATCTGGTTTCGCAATACTTCCTGATGGAGCAGTCCTTCATGGAGGAGGAATTCTTGATGTTGGGTCTGGTGGCTCTCTATTGACGGTTGCATTTCAGATCTTAGTTGATTCAGCACCAACTGCAAAACTCTCTCTTGGATCAGTGGCAACTGTTAATAGCCTTATCAAGTGCACAGTTGAAAGGATCAAGGCAGCAGTATCATGTGAGAACACATGA 2181 0.475 MFQPNMFDSHHHLLDMPHKTPESEMGKIRDEEFESKSGTENMDAPSGDDQDPNQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENSNLRAENEKLRAENIRYKEALSNATCPHCGGPASIGEMSFDEQHLRIENARLRDEIDRISGIAAKYVGKPMVSYPHLSTHTSSRSLDLGVGNFGAQSGIVGDMYGGGDLLRSVSLPTEADKPMIVELAVAAMEELIRMAQAGEPLWIPTSDNSTEILSEDEYLRTFPRGIGPKPLGLKSEASRETAVVIMNHISLVEILMDVNQWSSVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKHHPDGTWAVVDVSLDNLRSGPITRNRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCERLASAMASNIPAGDVGVITSPEGRKSMLKLAERMVMSFCAGVGASTTHTWTTLSGSGADDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRAENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDPTGSYVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGAVLHGGGILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKAAVSCENT* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0032 726 SUPERFAMILY Bet v1-like 487 718 - -
Vvi10g0032 726 Coils Coil 109 144 - -
Vvi10g0032 726 MobiDBLite consensus disorder prediction 11 38 - -
Vvi10g0032 726 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Vvi10g0032 726 SUPERFAMILY Homeodomain-like 43 115 IPR009057 -
Vvi10g0032 726 Gene3D - 45 132 - -
Vvi10g0032 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 721 IPR042160 -
Vvi10g0032 726 Pfam START domain 248 467 IPR002913 GO:0008289
Vvi10g0032 726 Gene3D - 251 470 IPR023393 -
Vvi10g0032 726 CDD START_ArGLABRA2_like 242 466 - -
Vvi10g0032 726 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Vvi10g0032 726 FunFam Homeobox-leucine zipper protein GLABRA 2 247 466 - -
Vvi10g0032 726 CDD homeodomain 58 116 IPR001356 GO:0003677
Vvi10g0032 726 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Vvi10g0032 726 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Vvi10g0032 726 SMART START_1 247 467 IPR002913 GO:0008289
Vvi10g0032 726 FunFam Homeobox-leucine zipper protein HDG1 46 131 - -
Vvi10g0032 726 SUPERFAMILY Bet v1-like 238 469 - -
Vvi10g0032 726 MobiDBLite consensus disorder prediction 1 67 - -
Vvi10g0032 726 SMART HOX_1 56 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0032 Vvi-Chr10 300629 304046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0032 1 724 Homeobox Transcription Factor Family AT4G04890 80.811 0.0 1220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi10g0032 START 2.7e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0032 K09338 - vvi:100264009 1454.11