Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0029 ATGGCAACATCCCTTGAACCTCTGCTACGCTCTTCCCAAATCAAAGCCTCTCACTGCAAGTCTCTCTATTTGGTCATCTTCTTAGCTGCTATCATAACCCCCATTGCTCTCTTTTCTATCCCTCTTATCAAAACCATCTCCACTGGCCCTCCCCGTGTGCTCCACAACCATGTGATGGAAATGGAAGATGTGGATCAACTTCAGAGGTTCCTAAAGGAATCCATGTCACACTTGCAAGGTGTGATGGAGATGACGGTCGATGTCAACCGTCGGATGAATGACCCTAGGGATCAAGCTGCTCTGTCTGACTGTGTGGAGCTCATGGACTTGTCCATGGGCAGGATAAGGGACTCTGTGGAGGCCCTTGGAAGGGGGACGGTCGATTCCCACGCAGATGCTCATGCCTGGCTTAGTGGTGTCCTCACCAATTATATCACCTGCACGGATGGGATAAATGGGCCATCCAGAATTTCAATGGAACGTGGCCTCAAACACTTGATCTCAAGAGCAGAAACCTCACTGGCCATGCTTGTTGCAGTTTCACCTGCCAAAGAGGATGTTCTCCAGCCACTTCACAGTGAATTTCCACCATGGGTGGACAGCAGAGACAGGAAAATCTTGGAGAGTTCGTCTAAGGACATTAAGGCCAATGTTGTGGTGGCAAAGGATGGAAGTGGGAACTACAAAACAGTGAAAGAAGCCATAGCATCAGTCCCAAATAATAGCAAGACCCGATATGTCATCCATGTGAAGAAGGGAACATATAAAGAGAATGTTGAAATTGTCACGAAACAGAAAAATGTGATGATCGTTGGAGATGGCATGGATTCAACGGTTATCACAGGAAGCCTAAATGTTATCGATGGTTCCACAACCTTCAAGTCAGCAACTCTTGCTGCCGTTGGTGATGGGTTCATAGCACAAGATATCTGGTTCCAAAACACAGCAGGACCTCAGAAGCATCAAGCAGTGGCGCTTCGAGTTGGGGCTGATCAAGCCGTCATAAACCGATGCCGCATCGACGCCTACCAGGACACACTCTATGCACACACCAACAGACAATTCTACAGAGATTGCTACATCACTGGTACCGTGGATTTCATATTTGGTAATGCAGCAGTTGTGTTTCAAAACTGCAAGCTAGTAGCCCGAAAGCCCATGGATAAACAAGCCAACATGGTCACAGCCCAAGGCCGAACCAACCCATATCAGAACACTGGAACTTCAATCCAAAACTGCAACATAATAGCCAGCTCTGATCTTGAGCCTGTAAAGGGCACCATAAAATCATACCTGGGTCGACCCTGGAAGGAATACTCTAGGGCTGTGGTCCTGCAGTCATACATTGGAGATCATATTGATCCAGCAGGGTGGTCAGTGTGGGACGGGGAATTTGCATTGAAGACTTTGTACTATGGTGAGTATGTGAATAGGGGACCAGGGGCTGGCACCAGCAAACGCGTTAAATGGCCAGGCTATCGCGTCATTACCAGTCCCGCGGAGGCCAGAAATTTCACAGTAGCTGAGCTGATTCAAGGAGGGACCTGGTTGGAGTCCACTGGTGTGGCTTACACAGAAGGGTTGTGA 1587 0.4846 MATSLEPLLRSSQIKASHCKSLYLVIFLAAIITPIALFSIPLIKTISTGPPRVLHNHVMEMEDVDQLQRFLKESMSHLQGVMEMTVDVNRRMNDPRDQAALSDCVELMDLSMGRIRDSVEALGRGTVDSHADAHAWLSGVLTNYITCTDGINGPSRISMERGLKHLISRAETSLAMLVAVSPAKEDVLQPLHSEFPPWVDSRDRKILESSSKDIKANVVVAKDGSGNYKTVKEAIASVPNNSKTRYVIHVKKGTYKENVEIVTKQKNVMIVGDGMDSTVITGSLNVIDGSTTFKSATLAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQAVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVFQNCKLVARKPMDKQANMVTAQGRTNPYQNTGTSIQNCNIIASSDLEPVKGTIKSYLGRPWKEYSRAVVLQSYIGDHIDPAGWSVWDGEFALKTLYYGEYVNRGPGAGTSKRVKWPGYRVITSPAEARNFTVAELIQGGTWLESTGVAYTEGL* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0029 528 NCBIfam pectinesterase inhibitor domain 89 156 IPR006501 GO:0004857
Vvi10g0029 528 SMART PMEI_2 59 176 IPR006501 GO:0004857
Vvi10g0029 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 176 IPR035513 -
Vvi10g0029 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 183 IPR035513 -
Vvi10g0029 528 PANTHER PECTINESTERASE 49 518 - -
Vvi10g0029 528 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vvi10g0029 528 SUPERFAMILY Pectin lyase-like 215 527 IPR011050 -
Vvi10g0029 528 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Vvi10g0029 528 FunFam Pectinesterase 211 528 - -
Vvi10g0029 528 Pfam Plant invertase/pectin methylesterase inhibitor 92 178 IPR006501 GO:0004857
Vvi10g0029 528 Gene3D - 211 528 IPR012334 -
Vvi10g0029 528 CDD PMEI-like_4 19 181 - -
Vvi10g0029 528 Pfam Pectinesterase 217 513 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0029 Vvi-Chr10 256162 258122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0029 1 528 Carbohydrate Esterase AT1G11580 55.277 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0029 K01051 - vvi:100253692 1056.97