Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0022 ATGGCTGACTCAGAATACTCTACTTCTAATGACACTTCTTGTGTTGATTCTCAAGAGCAAAGCAGCCAAGAAGCTAAGCTTGAATTCTCTGAAGACGAGGAAACACTGATCATTAGGATGTTTAATCTGGTTGGAGAGAGGTGGGCTCTAATTGCTGGGAGGATCCCTGGGAGAACAGCAGAGGACATTGAGAAGTACTGGAATTCAAGATACTCAACCAGTGAGTGA 228 0.4386 MADSEYSTSNDTSCVDSQEQSSQEAKLEFSEDEETLIIRMFNLVGERWALIAGRIPGRTAEDIEKYWNSRYSTSE* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0022 75 Gene3D - 28 71 - -
Vvi10g0022 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 75 IPR017930 -
Vvi10g0022 75 CDD SANT 28 68 IPR001005 -
Vvi10g0022 75 FunFam MYB-like transcription factor 28 70 - -
Vvi10g0022 75 SUPERFAMILY Homeodomain-like 28 71 IPR009057 -
Vvi10g0022 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 28 72 - -
Vvi10g0022 75 MobiDBLite consensus disorder prediction 1 29 - -
Vvi10g0022 75 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Vvi10g0022 75 Pfam Myb-like DNA-binding domain 28 69 IPR001005 -
Vvi10g0022 75 SMART sant 25 73 IPR001005 -
Vvi10g0022 75 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0022 Vvi-Chr10 229798 230362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0022 29 72 MYB Transcription Factor Family AT5G14750 54.545 3.50e-14 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi10g0022 Myb_DNA-binding 1.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0022 - - vvi:100255488 152.91