Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0021 ATGGAGTCCGCTGAGGATTTCGTGGAGAAAGATCCGTCTGGTCGATACGTTCGCTATAACGAGTTCTTGGGAAAGGGGGCATTCAAGACTGTGTATAAGGGTTTTGACGAGGACGATGGAACGGAGGTTGCGTGGTGCCAGGTTGACATCGACGACGTGTTGCAGTCGCCCGAGGAGGTTCAGCGATCCTTGTATTCGGAGGTAAATTTGATCAAGTCTTTGAAGCATGAAAACATAATTAAGTGTTATAATTCGTGGGTTAATGACGAGAAGAAGACGATAAACATCATAACTGAGTTGTTCACTTCTGGGAGTTTGAGGCAGTATCGGAAAAAGCACAAGAATGTTGATTTGAAGGCCATCAAGAACTGGTCCAGGCAAATCCTGAGGGGTTTGCACTATCTTCACACTCACAATCCGCCGATTATTCATAGAGATTTGAAGTGTGATAACATCTTTGTTAACGGGTTTAATGGGCAAGTTAAAATTGGGGATTTGGGATTAGCTATCGTTATGCAGCAGCCTTTTGCCCGGAGTTGCATCGGGACGCCGGAATTCATGGCTCCCGAGCTTTACGACGAGGAGTATAATGAGCTTGTTGACATATACTCATTTGGCATGTGTGTTTTGGAGATGGTTACTGGTGAATATCCATATAGTGAGTGCACAAACCCGGCGCAAATATTTAAGAAGGTCACCTCTGGTGTGAAGCCCGCTGCTCTTAGCAGAGTGGGTGATCCTCAGGTTAAGCAGTTTATTGAGAAGTGCCTGGTTCCAGCATCTTTGAGATTGTCTGCAGAGGAGCTCTTGAAAGACCCATTCCTGGCTTCTGAAAATTCGAAGGATCGTGTTTGCAATACCCTGCTGTTATCCAATTTTATGCCCAAAGTCATGAGTTCGCCAAAGCCTCAATCTTGTGTTAGTACGAACAATTTGGCTTCTGAAAGTTCCGAGGAGCTTGTTTGCAATCCCCTGCAGTTATCCCATCTTGTACCCAAATCCATGAACTCAGCAAAGCTTCAACTCCTTACTCTACAGATGGACCCCGACTGGCAGAAGCTTTTGGTTGGCATGAGGAATAGAAGTTTGTCAATCATCTCTTCCTTTGCCCTTGCAAAAAAAGGTCTTAAGCTGGATCTTGATGCAGTACACATGCAAAACCAGCAATGCCTTAGCCAACTCTTGAGGCAGAGGGAGGAAGTAGCAGAAGATGCAAAAGGGAGGTGGATCATAAAGAAGATACCTGTTATATGA 1254 0.4506 MESAEDFVEKDPSGRYVRYNEFLGKGAFKTVYKGFDEDDGTEVAWCQVDIDDVLQSPEEVQRSLYSEVNLIKSLKHENIIKCYNSWVNDEKKTINIITELFTSGSLRQYRKKHKNVDLKAIKNWSRQILRGLHYLHTHNPPIIHRDLKCDNIFVNGFNGQVKIGDLGLAIVMQQPFARSCIGTPEFMAPELYDEEYNELVDIYSFGMCVLEMVTGEYPYSECTNPAQIFKKVTSGVKPAALSRVGDPQVKQFIEKCLVPASLRLSAEELLKDPFLASENSKDRVCNTLLLSNFMPKVMSSPKPQSCVSTNNLASESSEELVCNPLQLSHLVPKSMNSAKLQLLTLQMDPDWQKLLVGMRNRSLSIISSFALAKKGLKLDLDAVHMQNQQCLSQLLRQREEVAEDAKGRWIIKKIPVI* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0021 417 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
Vvi10g0021 417 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 310 - -
Vvi10g0021 417 CDD STKc_WNK 15 275 - -
Vvi10g0021 417 Gene3D Transferase(Phosphotransferase) domain 1 101 283 - -
Vvi10g0021 417 SMART serkin_6 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0021 417 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0021 417 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Vvi10g0021 417 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0021 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vvi10g0021 417 FunFam probable serine/threonine-protein kinase WNK9 101 280 - -
Vvi10g0021 417 FunFam Probable serine/threonine-protein kinase WNK1 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0021 Vvi-Chr10 223065 224318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0021 1 282 MAP Kinase Kinase Kinase AT5G41990 73.404 1.73e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi10g0021 Pkinase 9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0021 K08867 - vvi:100250308 836.254