Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0008 ATGACTATGTGTTCCCAGATTTTGAAGACCGACAAAGAACTTACTTTCAGCCATGTTTTTCTGCTTCTGCCTCTGCTCCTTCTCAGTACTCCTGCCATTGCACAACCTATGTATACATTTTGTGACAGTGGAACCGGTAATTACACATCTAACAGCTCATTTGAAAATAACCTCAAGCACCTTCTCCAATCTCTACCTTCCAATACATATCTTACATGTTTTAATATAACCTCCATGGGAATTGATGCCAACCGGGTTTCTGGGCGAGCACTATGTAGAGGGGATGTCACTGATAAGGTTTGCTGGATTTGCTTGGAGAATGCAAGCAGGGAAATCATGAAGGAATGCAAGAGTCAAGAGGCAATTATATGGTATGAATTATGCCAAGTCCACTATTCATACCGGATTCTGTCTGGTATGGATGCTTATACTGGAAAGTATCCACTGTGGAATAATCAGGAGAAAAACGTATCAGATCCACTATCTTTTTATGAAGTTTTGAATGATCTAATGCGGAACCTAACAATTAAGGCTGCACAGGGTCCTTCTAAGCTCATGTTTGGGACTGACCAAGTCAAATTTTCAAGGTCTGATACCATATATGGACTTGTACAGTGCACCAGGGATCTAACTGTGGATTCATGCAGAAAGTGTTTGAGTTCTGCGTTAGGAGATCTTAAGGCATGCTGCTATGGTCGGGGAGGTGGAACTATTTTTAGCAGGAGTTGTAACATGAGATATGGGTTGACTCGCTTTTATGATACTCCATCTGTCAAAGGGGAATGGAAGACATGGATGATAGTGTTGGTCATTTGTGTACCAACGTTTGCAGCGGCAGTTCTTGTTGGCTCCTGTGTTCTCTATTATAGGGGGAGGACGGGAACACAAAATGATGAGGAGAAAAGCCAACGTGCTCTGCTGCATAATTTGGCGACCCCCACTGCTGCTGCAATTACACAAGAATTCAATTTACTCAGTTCTCAGGAATTGCCCTTCATGGAGTTGGCAACAATCAGGGCAGCTACCAATGACTTTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAGTCATGGCAAGGCATAGAGGAGTTCAAGAATGAGATCATACTAATCGCAAAACTTCAACACAGGAACCTTGTCAGACTCTTGGGCTGTGGCACAGAGGGACAAGAAAAGCTGCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTGATGGTATCGCCAGAGGACTTCTTTACCTTCATGAGGACTCCCGGCTTAAAATCATTCACAGGGATCTAAAGCCTAACAATGTTCTATTGAACCATGATATGGTTGCAAAGATATCAGATTTTGGCATGGCAAGGATTTTTGGTGAAAATCAAAATGCAGCTAATACTCGTAGAATTGTAGGAACATACGGATACATGGCTCCTGAGTATGCAATGGAGGGAATGTTCTCTATGAAATCTGATGTATTCAGCTTTGGTGTCATCTTGCTTGAGATCATCAGTGGGAAAAGAAATAGTGGCTTCCACCTCACAGGACATGCTCACACACTCCCAGCATATGCATGGAAACTATGGAATGAAGGAAAAGGATTGGAATTTGTACACCCTTTGCTGACAGAATCATGCCCCACAGAAGTTGTTCTGAGATGCATCCATATTGGGCTTTTGTGTGTTCAGGAAAATCCAGCAGACAGACTGACAATGTCGTCTGTGGTTGTTCTGTTGGAAAGTAAATCAATGGCTCTTCCTGAACCAAAACAACCACCATTCTCTGTTGGCATAGCTATTCAGTTTAATCAATCTCCCACAACACCTCTCTCTGTAAACGAGCTTGCTGTTTCTAGTTTTCTGCCACGGTGA 1983 0.4226 MTMCSQILKTDKELTFSHVFLLLPLLLLSTPAIAQPMYTFCDSGTGNYTSNSSFENNLKHLLQSLPSNTYLTCFNITSMGIDANRVSGRALCRGDVTDKVCWICLENASREIMKECKSQEAIIWYELCQVHYSYRILSGMDAYTGKYPLWNNQEKNVSDPLSFYEVLNDLMRNLTIKAAQGPSKLMFGTDQVKFSRSDTIYGLVQCTRDLTVDSCRKCLSSALGDLKACCYGRGGGTIFSRSCNMRYGLTRFYDTPSVKGEWKTWMIVLVICVPTFAAAVLVGSCVLYYRGRTGTQNDEEKSQRALLHNLATPTAAAITQEFNLLSSQELPFMELATIRAATNDFSESNKLGHGGFGTVYKGVLPNGKEIAVKRLSKKSWQGIEEFKNEIILIAKLQHRNLVRLLGCGTEGQEKLLIYEFMPNKSLDIFIFDADKRQQLNWEICHNIIDGIARGLLYLHEDSRLKIIHRDLKPNNVLLNHDMVAKISDFGMARIFGENQNAANTRRIVGTYGYMAPEYAMEGMFSMKSDVFSFGVILLEIISGKRNSGFHLTGHAHTLPAYAWKLWNEGKGLEFVHPLLTESCPTEVVLRCIHIGLLCVQENPADRLTMSSVVVLLESKSMALPEPKQPPFSVGIAIQFNQSPTTPLSVNELAVSSFLPR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0008 660 SMART serkin_6 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0008 660 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Vvi10g0008 660 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vvi10g0008 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 311 420 - -
Vvi10g0008 660 CDD STKc_IRAK 351 617 - -
Vvi10g0008 660 ProSiteProfiles Protein kinase domain profile. 345 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0008 660 SUPERFAMILY Protein kinase-like (PK-like) 331 641 IPR011009 -
Vvi10g0008 660 Pfam Salt stress response/antifungal 41 133 IPR002902 -
Vvi10g0008 660 Pfam Salt stress response/antifungal 155 248 IPR002902 -
Vvi10g0008 660 FunFam Uncharacterized protein 421 622 - -
Vvi10g0008 660 Gene3D - 146 252 IPR038408 -
Vvi10g0008 660 Gene3D - 34 135 IPR038408 -
Vvi10g0008 660 FunFam Cysteine-rich receptor-like protein kinase 10 146 252 - -
Vvi10g0008 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vvi10g0008 660 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 632 - -
Vvi10g0008 660 Gene3D Phosphorylase Kinase; domain 1 319 420 - -
Vvi10g0008 660 Pfam Protein kinase domain 346 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0008 660 ProSiteProfiles Gnk2-homologous domain profile. 36 137 IPR002902 -
Vvi10g0008 660 Gene3D Transferase(Phosphotransferase) domain 1 421 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0008 Vvi-Chr10 77195 79920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0008 19 660 Receptor kinase-like Gene Family AT4G05200 42.544 2.81e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0008 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0008 - - vvi:100257214 1335.86