Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0007 ATGATGTCCTCCCAAGGTGTCTCAAAAGCCATTCAATTGCTTTTCATTTCTTCTGTTCTTTCTGGCTTTCCTGATCTTGTCTGTGCTGATCCTCCTTATAATGTTTGTTCAACCACCACTACTTATGGACTTAATAGTCTCTTCCAAAGTAATCTTGAAAATCTCCTTGATTCCTTACCTTCTAAAGCTTTTGTCTCCCACTTTGACAATACCTCCATTGGAAATGGCCTAGACAGAGTTAATGGTGCCTTTCTGTGCCTCAATTATGTTGCAAATGATCAATGCAGAAACTGCATATCTACAGCAGCATACCATGTCAAGAAACTTTGTCCAAACATGAATGAAGCCATCGTGTGGGAGGATGAATGCCAAATTCTCTATTCTAATGAAACATTCTTAGGTCATTTGAGTACTACAGGAAACATACCTCTAGATAATATGAAGAATGTTTCAGACTTAGAGTCAGAACAGCTGAGATTTAGATCTGTTGTGAACGATACCCTGCAGAACCTTATCAAACAGGCAGCTTTCAATTCTTCAACTGACATGTATGCCACCAAACCAGTAGTCTTTACAGATGTAGATATCTTATATGCTCTAGTGCAATGCACTCCAGACTTGTCACCAGATAACTGTAGTATATGCCTTCAGACTGCCACAACAGAAATCTTAGCAGTCTATTATTTTTCACGGGGCGCAAGGCTTCTCAGTCGTAGTTGCTATCTAAGGTATGAGTTCTACCCCTTTTATGAAGTTGCAACTGAGCCCCAAGCTCCTGTTTCTCCACAAAATCCGGGGACAAGGAAAGATGGAAGAAGGAAAACAGGGATGATTCTAATCATTACAAGTGTATCAGTATCTTTGGTTGTGGCAACTTTGGCTTTCTATGTCTATTGTCTAGCAACGAGGAATGGAAAGAAAAAGGAGAGAAAACAATATCTAAATCGAGAAGTTCAATTACCTGATATTGATGACCCCAGTTACACAGGTCCATATCAATTTCACGGAAGGAAAAGTCTGAATTCTCAGGAATTTCTCTTTATTGATTTAGCAACTATACATGAAGCTACTGACAACTTCTCTGAATTGAATAAGCTCGGACAAGGTGGTTTTGGCCCTGTTTACAAGGGTGTTTTGCGTGATGGCAAGGAAGTAGCAGTTAAGAGGCTTTCAAGTGATTCTGAGCAAGGTTCAGAGGAATTCACAAACGAAGTTCTGCTAATAATGAAACTTCAACATAAGAATCTGGTCAGGCTTTTGGGCTTTTGTGTGGACAGGGAGGAAAGGATGCTTGTCTATGAATATATGCCCAACAGTAGCTTAGATGTCTTCCTCTTTGATCCAAGGAGACGTGCACAACTTGATTGGAGCAGACGGCTTAATATTATTGGTGGAATTGCTCGAGGGATTCTTTATCTTCACGAAGATTCTCGACTTAGAATCATTCATAGGGACCTAAAAGCAAGCAATGTGCTATTGGACTGTGATATGAAGCCAAAGATCTCTGACTTTGGAATGGCAAGGATCTTTGGAGGAAGTGAAGGTGAAGCTAACACCGCTACAATAGTTGGAACACATGGATATATGGCTCCAGAGTATGCTATGGAAGGGCTATATTCCGTTAAGTCTGATGTTTTTAGCTTCGGAGTTCTCTTACTTGAGATCATAACTGGGAGGAGGAATTCTGGCTTCCATCTCTCCAAGCGCGCTCCTAGCCTCATATCATATGTGAGTTTATCTGGATTAACTTAA 1752 0.4047 MMSSQGVSKAIQLLFISSVLSGFPDLVCADPPYNVCSTTTTYGLNSLFQSNLENLLDSLPSKAFVSHFDNTSIGNGLDRVNGAFLCLNYVANDQCRNCISTAAYHVKKLCPNMNEAIVWEDECQILYSNETFLGHLSTTGNIPLDNMKNVSDLESEQLRFRSVVNDTLQNLIKQAAFNSSTDMYATKPVVFTDVDILYALVQCTPDLSPDNCSICLQTATTEILAVYYFSRGARLLSRSCYLRYEFYPFYEVATEPQAPVSPQNPGTRKDGRRKTGMILIITSVSVSLVVATLAFYVYCLATRNGKKKERKQYLNREVQLPDIDDPSYTGPYQFHGRKSLNSQEFLFIDLATIHEATDNFSELNKLGQGGFGPVYKGVLRDGKEVAVKRLSSDSEQGSEEFTNEVLLIMKLQHKNLVRLLGFCVDREERMLVYEYMPNSSLDVFLFDPRRRAQLDWSRRLNIIGGIARGILYLHEDSRLRIIHRDLKASNVLLDCDMKPKISDFGMARIFGGSEGEANTATIVGTHGYMAPEYAMEGLYSVKSDVFSFGVLLLEIITGRRNSGFHLSKRAPSLISYVSLSGLT* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0007 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Vvi10g0007 583 Pfam Protein tyrosine and serine/threonine kinase 363 558 IPR001245 GO:0004672|GO:0006468
Vvi10g0007 583 Gene3D Phosphorylase Kinase; domain 1 332 435 - -
Vvi10g0007 583 Gene3D - 145 249 IPR038408 -
Vvi10g0007 583 Gene3D - 31 132 IPR038408 -
Vvi10g0007 583 ProSiteProfiles Gnk2-homologous domain profile. 141 249 IPR002902 -
Vvi10g0007 583 SUPERFAMILY Protein kinase-like (PK-like) 343 561 IPR011009 -
Vvi10g0007 583 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 436 527 - -
Vvi10g0007 583 FunFam Cysteine-rich receptor-like protein kinase 10 332 435 - -
Vvi10g0007 583 FunFam Cysteine-rich receptor-like protein kinase 28 32 131 - -
Vvi10g0007 583 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Vvi10g0007 583 ProSiteProfiles Protein kinase domain profile. 360 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0007 583 FunFam Cysteine-rich receptor-like protein kinase 10 141 249 - -
Vvi10g0007 583 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 577 - -
Vvi10g0007 583 Pfam Salt stress response/antifungal 36 129 IPR002902 -
Vvi10g0007 583 Pfam Salt stress response/antifungal 156 246 IPR002902 -
Vvi10g0007 583 SMART serkin_6 360 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0007 583 Gene3D Transferase(Phosphotransferase) domain 1 436 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0007 Vvi-Chr10 72697 75026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0007 27 577 Receptor kinase-like Gene Family AT4G05200 45.246 1.18e-155 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0007 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0007 - - vvi:109121465 1142.1