Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0006 ATGGACACCAAGATTTCAGATTTTGGCATTGCAAAGCTTGTTGGGATGGATCAAACTCATTGCAGTACCAGCAGACTAGTAGGAACGCTTGGATATATGGCACAGGAATATGCAATGGCAGGGCATTTCTCTGTTAAGTCAGACGTCTTCAGTTTCGGTATGATACTTCTGGAGATTGTGAGTGGTCAAAAGAACATCTCCTTCCATCATTCAGGATAA 219 0.4247 MDTKISDFGIAKLVGMDQTHCSTSRLVGTLGYMAQEYAMAGHFSVKSDVFSFGMILLEIVSGQKNISFHHSG* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0006 72 ProSiteProfiles Protein kinase domain profile. 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0006 72 SUPERFAMILY Protein kinase-like (PK-like) 3 65 IPR011009 -
Vvi10g0006 72 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 68 - -
Vvi10g0006 72 Pfam Protein tyrosine and serine/threonine kinase 3 64 IPR001245 GO:0004672|GO:0006468
Vvi10g0006 72 Gene3D Transferase(Phosphotransferase) domain 1 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0006 Vvi-Chr10 55523 55926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0006 1 71 Receptor kinase-like Gene Family AT4G23230 61.972 1.22e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0006 PK_Tyr_Ser-Thr 4.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0006 - - fve:101305918 108.997