Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0004 ATGGGAGAAGAGCTGATGCAGCAGCTCAGATCCAGAGCTACAGAGCTCCTCCTCAGAGAAGAGTGGAACGAGTCCGTACAAGCCTACTCTCATTTCATCTCTCTCTGCCAACACCACATCTCACGTATCCATCAACACGCTGATCCCGATCATCTCTTCAAACTCCAAAAATCCCTCTGCTTAGCCCTTTCCAATCGGGCTGAAGCGCGGTCTCGGCTGCGTGATTTGGCCAATGCTCTCCAAGATTGTGATGGAGCACTTGAAATTGAGGGCACCCATTTCAAGACTCTGCTCTGCAAAGGTAAAATCTTGCTTGGTCTCAATAGATACTCCCTGGCATTGGACTGCTTCAAAGCAGCTCTTCTTGATCCTCAGGCCGGTTTGAAATGTGGAGCCCTTGAAGGGTACTTGGAGAGATGCAAGAAACTTGAGCATCAGTCAAGGACTGGAGCCTTTGACCTCTCTGATTGGGTCGTAAATGGGTTTCGTGGAAAGTTTCCGGAACTGGCAGAGTACATTGGTGCAGTGCAGATTATGAAGTCTGAGATTAGTGGGCGTGGCCTGTTTGCAACAAAGAACGTTGATGCTGGGACTTTAGTCTTGGTTACCAAGGCAATTGCTACAGAAAGGTGCATTTTACCGGAGCAGAATGATGATTCGGCGGATAATATACAGTTGGTCATGTGGAAGAATTTTATTGATAAAGTTGTTGAATCGGCTTCAAAATGCAAGAGACTCCATCATTTAATTTCGGTGCTATCCAATGGGGAAGATGAGGATGTGCTTGAGGTTCCTGATGTGAATCTCTTTAGGCCTGAGACAGAGGAGAGTGGCCTCTCAATGGGGAAGCTGGATATGGGCAAAATTTTAAGCATCTTGGATGTGAATTCTCTAGTTGAGGATGCGACCTCAGCTAAAGTTTTGGGGAAGAATAGTGATTACTATGGTGTGGGGTTATGGATACTGCCTGCATTCATCAACCATTCATGTAACCCCAATGCAAGGCGCTTGCATGTGGGGGATAATGTAATAGTTCATACTTCCAGAGATGTCAAGGCAGGGGAAGAGATCACATTCGCATACTTTGATGTGCTCTCACCATGGAGAAAGCGCAAGGATATGGCCAAGACATGGGGATTCCAGTGTAATTGCAAGAGGTGCAAGTTTGAAGAGCAGATATGCTCCAAAATGGAGATACAAGAGATCCAGATGGGACTTGAAAGAGGACTTGACATGGGTGATGCAATTTATAGGCTAGAAGAAGGTATGAGGAGATGGACGGTGAGGGGAAAGGAGAAAGGGTATTTGAGGGCATCCTTCTGGGCTGCCTACTCTGAAGCTTATGAGTCTGAGAAAACGGTAAGGAGGTGGGGTAGGCGGATTCCAGCAGTAGAGGCTGTGGTGGATAGCGTTTTGGAAGCTGTGGGAAGTGATGAGAGGGTTTTGAAGGCCTTTATGGCTGGACTGAAGAGAAGTGGTGGAGGTGGGGTAGTGGAAATAGAGAGAGCAATGAAGTTAGCAAGAGGCGTATATGGTAAGGTGGTGAAGAAACAGGCAATGAGGACTCTTATTTCGCTTGGCTATTAG 1587 0.4688 MGEELMQQLRSRATELLLREEWNESVQAYSHFISLCQHHISRIHQHADPDHLFKLQKSLCLALSNRAEARSRLRDLANALQDCDGALEIEGTHFKTLLCKGKILLGLNRYSLALDCFKAALLDPQAGLKCGALEGYLERCKKLEHQSRTGAFDLSDWVVNGFRGKFPELAEYIGAVQIMKSEISGRGLFATKNVDAGTLVLVTKAIATERCILPEQNDDSADNIQLVMWKNFIDKVVESASKCKRLHHLISVLSNGEDEDVLEVPDVNLFRPETEESGLSMGKLDMGKILSILDVNSLVEDATSAKVLGKNSDYYGVGLWILPAFINHSCNPNARRLHVGDNVIVHTSRDVKAGEEITFAYFDVLSPWRKRKDMAKTWGFQCNCKRCKFEEQICSKMEIQEIQMGLERGLDMGDAIYRLEEGMRRWTVRGKEKGYLRASFWAAYSEAYESEKTVRRWGRRIPAVEAVVDSVLEAVGSDERVLKAFMAGLKRSGGGGVVEIERAMKLARGVYGKVVKKQAMRTLISLGY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0004 528 Gene3D Tetratricopeptide repeat domain 3 152 IPR011990 GO:0005515
Vvi10g0004 528 SMART tpr_5 6 39 IPR019734 GO:0005515
Vvi10g0004 528 SMART tpr_5 94 126 IPR019734 GO:0005515
Vvi10g0004 528 SMART tpr_5 60 93 IPR019734 GO:0005515
Vvi10g0004 528 Gene3D SET domain 288 393 IPR046341 -
Vvi10g0004 528 SUPERFAMILY TPR-like 8 121 IPR011990 GO:0005515
Vvi10g0004 528 CDD SET_SMYD 311 387 - -
Vvi10g0004 528 SMART set_7 174 368 IPR001214 GO:0005515
Vvi10g0004 528 ProSiteProfiles SET domain profile. 174 362 IPR001214 GO:0005515
Vvi10g0004 528 Pfam SET domain 185 361 IPR001214 GO:0005515
Vvi10g0004 528 SUPERFAMILY SET domain 175 388 IPR046341 -
Vvi10g0004 528 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 524 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi10g0004 SET 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0004 - - vvi:100253788 1060.06