Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1284 ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCTATTTCTTCAGATCCTGGAGGGGATTCTAACTCGAAAAGAGCCAAGTTTGAACAAGAAACTGAAGTGAAGCCTGTTGAGAAATCAAATATTGTTGAAACAATCTGCACAGATCAGGATCAGCCTGTTGATGCACCAAAAGAAACTACAGTTGGCATATCTGATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGCTATGATGAGCTTCCCAAAGAATTAAATGAAATGAAAATTAGAGATGAGAAAAGCAAGAACAACAATGACAAGGATATAGAAGCAACTGTTGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATAACAACTGCTATTGGTGGTCGGGATGGACAACCAAAGCAGACAATCTCATACATGGCTGAACGTGTTGTTGGCACTGGTTCTTTTGGTGTCGTTTTTCAGGCTAAGTGCCTTGAGACTGGTGAAGCAGTTGCCATAAAGAAAGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACCATCCAAACGTTGTTAAACTAAAGCACTGCTTCTTTTCAACCACCGACAAAGATGAATTATACCTTAACTTAGTTCAGGAGTATGTACCTGAAACTGTCTACAAAGTTTCAAAACACTATGTTAGGATGCACCAACATATGCCCATGATTTATGTGCAACTGTATACATACCAGATATGCCGTGCATTGAATTATTTACATCAAGTTATCGGTGTTTGTCACCGTGACATCAAACCCCAGAATCTACTGGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAGCCCAACATATCATACATTTGCTCTCGATATTATAGAGCTCCTGAACTTATATTTGGGGCAACTGAATACACTACCGCCATTGATATGTGGTCTGTTGGTTGTGTTTTAGCTGAGCTACTTCTAGGACAGCCATTGTTTCCTGGTGAAAGTGGGGTTGATCAGTTAGTAGAGATAATCAAGATCTTGGGAACTCCAACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCATCCATGGCACAAGGTTTTTCACAAGAGAATGCCACCTGAAGCTGTGGATCTGGTGTCAAGGCTGCTTCAGTATTCTCCAAATCTACGTTGCACTGCTTTGGCTGCTTGTGCACATCCATTTTTTGATGAACTGCGGGATCCAAATGCATGCTTGCCAAATGGGCGACCCCTACCTCCTTTGTTCAACTTCACATCTCATGAACTGGCAAATGCACCTGAAGACTTGCGGCGCCGCCTCATTCCTGAACATGCAAGGAGTTGA 1410 0.4177 MNMMRRLKSIASGRTSISSDPGGDSNSKRAKFEQETEVKPVEKSNIVETICTDQDQPVDAPKETTVGISDVSTVARTEKSGYDELPKELNEMKIRDEKSKNNNDKDIEATVVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNVVKLKHCFFSTTDKDELYLNLVQEYVPETVYKVSKHYVRMHQHMPMIYVQLYTYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDELRDPNACLPNGRPLPPLFNFTSHELANAPEDLRRRLIPEHARS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1284 469 SUPERFAMILY Protein kinase-like (PK-like) 139 451 IPR011009 -
Vra9g1284 469 CDD STKc_GSK3 135 427 IPR039192 -
Vra9g1284 469 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
Vra9g1284 469 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1284 469 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
Vra9g1284 469 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 469 - -
Vra9g1284 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vra9g1284 469 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1284 469 PANTHER SHAGGY-LIKE KINASE 6 469 - -
Vra9g1284 469 MobiDBLite consensus disorder prediction 9 25 - -
Vra9g1284 469 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1284 469 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
Vra9g1284 469 MobiDBLite consensus disorder prediction 26 42 - -
Vra9g1284 469 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1284 Vra-Chr9 20906940 20911558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1284 146 427 Core Cell Cycle Gene Families AT1G76540 35.517 3.85e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vra9g1284 Pkinase 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1284 K00924 - gmx:100811346 902.508