LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g1284	ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCTATTTCTTCAGATCCTGGAGGGGATTCTAACTCGAAAAGAGCCAAGTTTGAACAAGAAACTGAAGTGAAGCCTGTTGAGAAATCAAATATTGTTGAAACAATCTGCACAGATCAGGATCAGCCTGTTGATGCACCAAAAGAAACTACAGTTGGCATATCTGATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGCTATGATGAGCTTCCCAAAGAATTAAATGAAATGAAAATTAGAGATGAGAAAAGCAAGAACAACAATGACAAGGATATAGAAGCAACTGTTGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATAACAACTGCTATTGGTGGTCGGGATGGACAACCAAAGCAGACAATCTCATACATGGCTGAACGTGTTGTTGGCACTGGTTCTTTTGGTGTCGTTTTTCAGGCTAAGTGCCTTGAGACTGGTGAAGCAGTTGCCATAAAGAAAGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACCATCCAAACGTTGTTAAACTAAAGCACTGCTTCTTTTCAACCACCGACAAAGATGAATTATACCTTAACTTAGTTCAGGAGTATGTACCTGAAACTGTCTACAAAGTTTCAAAACACTATGTTAGGATGCACCAACATATGCCCATGATTTATGTGCAACTGTATACATACCAGATATGCCGTGCATTGAATTATTTACATCAAGTTATCGGTGTTTGTCACCGTGACATCAAACCCCAGAATCTACTGGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAGCCCAACATATCATACATTTGCTCTCGATATTATAGAGCTCCTGAACTTATATTTGGGGCAACTGAATACACTACCGCCATTGATATGTGGTCTGTTGGTTGTGTTTTAGCTGAGCTACTTCTAGGACAGCCATTGTTTCCTGGTGAAAGTGGGGTTGATCAGTTAGTAGAGATAATCAAGATCTTGGGAACTCCAACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCATCCATGGCACAAGGTTTTTCACAAGAGAATGCCACCTGAAGCTGTGGATCTGGTGTCAAGGCTGCTTCAGTATTCTCCAAATCTACGTTGCACTGCTTTGGCTGCTTGTGCACATCCATTTTTTGATGAACTGCGGGATCCAAATGCATGCTTGCCAAATGGGCGACCCCTACCTCCTTTGTTCAACTTCACATCTCATGAACTGGCAAATGCACCTGAAGACTTGCGGCGCCGCCTCATTCCTGAACATGCAAGGAGTTGA	1410	0.4177	MNMMRRLKSIASGRTSISSDPGGDSNSKRAKFEQETEVKPVEKSNIVETICTDQDQPVDAPKETTVGISDVSTVARTEKSGYDELPKELNEMKIRDEKSKNNNDKDIEATVVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNVVKLKHCFFSTTDKDELYLNLVQEYVPETVYKVSKHYVRMHQHMPMIYVQLYTYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDELRDPNACLPNGRPLPPLFNFTSHELANAPEDLRRRLIPEHARS*	470

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra9g1284	469	SUPERFAMILY	Protein kinase-like (PK-like)	139	451	IPR011009	-
Vra9g1284	469	CDD	STKc_GSK3	135	427	IPR039192	-
Vra9g1284	469	Gene3D	Transferase(Phosphotransferase) domain 1	220	468	-	-
Vra9g1284	469	ProSiteProfiles	Protein kinase domain profile.	140	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra9g1284	469	Gene3D	Phosphorylase Kinase; domain 1	125	219	-	-
Vra9g1284	469	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	6	469	-	-
Vra9g1284	469	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	261	273	IPR008271	GO:0004672\|GO:0006468
Vra9g1284	469	Pfam	Protein kinase domain	140	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra9g1284	469	PANTHER	SHAGGY-LIKE KINASE	6	469	-	-
Vra9g1284	469	MobiDBLite	consensus disorder prediction	9	25	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g1284	Vra-Chr9	20906940	20911558	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g1284	146	427	Core Cell Cycle Gene Families	AT1G76540	35.517	3.85e-55	184

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Vra9g1284		Pkinase	1e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g1284	K00924		-	gmx:100811346	902.508

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