Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1282 ATGAGTTTTGGGGGTTTTCTTGAGAACAAATCGGGTAGTGGCGCAGCCAGACACGACCTTTTGGATATTCCTTACAACAACGTTACCACCACCAACCATACCAACACCAACGAAGACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTGGTGACCACCACCACTCCAACCCTGGCCAAATCCATGTTCAACTCCCCAGGACTATCTCTGGCACTTCAGCAAACCAATATAGATGGACAAGAAGATGTGAATAGAATGGTCGAAAATAGCTTCGAACCAAACGGTTTGCGAAGAAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGCGACAACATCGACGGCGCTTCCGGCGATGAACAAGATGCCGCCGACAACCCTCCGAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGACTCGAACTTAGCAAGAGGCTGTGCTTGGAAACTCGACAGGTGAAGTTTTGGTTCCAAAACCGGAGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACTTTGCTGAGGCAAGAGAACGACAAGCTGAGAGCGGAGAACATGTCTATCAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGCCCTGCCATCATCGGCGAGATTTCGCTGGAGGAGCAGCATCTTCGGATTGAGAACGCCCGGTTGAAGGACGAGCTCGATCGCGTGTGTGCACTCACGGGCAAGTTTCTGGGTCGCCCCGTTTCTTCGTTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGGAACGGGTTTGGTGGAATCAGCATTGGCACTACATTGCCTTTGGGACAAGATTTTGGGATGGGAATGTCGATGTCTGTGTCTAACAACCCTTTGGCTATGGTGTCTCCCTCTAGTACCCGACCAACTTCTGTTGTGGGTGGGTTTGATAGGTCCATGGAAAGGTCCATGTTTCTTGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGGTGAGGAATGTTGAAGGTGGGAGGGAAATCATGAACCATGAGGAGTACGCGAGAACCTTCACTCCTTGTATTGGTTTGAGACCAAATGGGTTTGTGTCCGAAGCCTCTAGGGAAAATGGAATGGTAATCATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACTACTGAAGTGATATCTAACGGGATAAATGGAACAAGAAATGGAGCACTTCAATTAATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTTCCTGTTCGTGAGGTCAATTTCCTAAGGTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTGGATGTTTCCATAGATAGCATCAGAGAAAGTTCAGGAGCACCATCCACTTTTGTCAACTGTAGGAGGCTTCCTTCTGGTTGTGTTGTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCACGCAGAATACGATGAGAGCCAAATTCACCAGGTTTATAGACCATCGTTGAACTCAGGCATGGGGTTCGGTGCACAGCGTTGGGTGGCTACCCTTCAACGCCAATGCGAGTGTCTTGCCATCTTAATGTCCTCAGCAGCACCCTCTCGAGACCATTCAGCAATAACGGCGGGGGGAAGGCGGAGCATGGTGAAGCTGGCGCAGCGAATGACCAACAACTTCTGTGCCGGCGTGTGTGCCTCCACGGTGCACAAGTGGAACAAGCTCAACCCCGGGAACGTGGATGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGATGATCCCGGCGAGCCGCCGGGGATTGTGCTGAGCGCGGCCACCTCCGTTTGGCTCCCCGTGTCGCCGCAGAGGCTCTTTGACTTCCTTCGGGACGAGCGCCTCCGAAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTCTCTCTCCTCCGAGCCAGTGCCATAAACTCCAGCCAGAGCAGCATGCTTATACTACAGGAGACATGCATAGACGAGGCGGGGTCACTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTGGTTATGAACGGTGGTGATTCAGCTTATGTGGCACTGTTGCCATCGGGATTTGCTATTGTTCCCGATGGGCCTGGGTCTCGTGGGTCACAGAATGGGCCTACTGCCGCAACAAACGGTGGTGATAATGGTGCTGCACGCGTGAGTGGGTCCCTCTTAACGGTTGCTTTTCAGATCCTTGTGAATAGTCTTCCTACAGCCAAACTCACAGTAGAGTCCGTGGAAACCGTGAACAATCTCATATCATGCACCGTTCAAAAAATCAAAGCTGCACTCCACTGTGAAAGTTAA 2502 0.5192 MSFGGFLENKSGSGAARHDLLDIPYNNVTTTNHTNTNEDDRMPFGAISQPRLVTTTTPTLAKSMFNSPGLSLALQQTNIDGQEDVNRMVENSFEPNGLRRSREEEHESRSGSDNIDGASGDEQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGISIGTTLPLGQDFGMGMSMSVSNNPLAMVSPSSTRPTSVVGGFDRSMERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREIMNHEEYARTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPSTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQVYRPSLNSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSSQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSQNGPTAATNGGDNGAARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1282 833 Pfam Homeodomain 132 187 IPR001356 GO:0003677
Vra9g1282 833 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Vra9g1282 833 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 76 830 - -
Vra9g1282 833 SUPERFAMILY Bet v1-like 591 826 - -
Vra9g1282 833 CDD homeodomain 131 189 IPR001356 GO:0003677
Vra9g1282 833 MobiDBLite consensus disorder prediction 761 780 - -
Vra9g1282 833 MobiDBLite consensus disorder prediction 96 112 - -
Vra9g1282 833 MobiDBLite consensus disorder prediction 765 780 - -
Vra9g1282 833 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Vra9g1282 833 ProSiteProfiles START domain profile. 330 567 IPR002913 GO:0008289
Vra9g1282 833 SMART HOX_1 130 193 IPR001356 GO:0003677
Vra9g1282 833 Gene3D - 118 205 - -
Vra9g1282 833 SUPERFAMILY Homeodomain-like 118 189 IPR009057 -
Vra9g1282 833 Coils Coil 183 215 - -
Vra9g1282 833 MobiDBLite consensus disorder prediction 92 139 - -
Vra9g1282 833 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 830 IPR042160 -
Vra9g1282 833 CDD START_ArGLABRA2_like 334 563 - -
Vra9g1282 833 Pfam START domain 339 564 IPR002913 GO:0008289
Vra9g1282 833 SUPERFAMILY Bet v1-like 331 564 - -
Vra9g1282 833 SMART START_1 339 564 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1282 Vra-Chr9 20863773 20870424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1282 1 833 Homeobox Transcription Factor Family AT3G61150 65.321 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra9g1282 START 2.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1282 K09338 - gmx:100811873 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1282 9 20863773 20870424 Vra9g1282 9 20863773 20870424 ECH