Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1272 ATGGCCACCGCAACGGCTACGGCAGCGGCAACGTCCTCCTTCATGGGGACGCGCCTCCTGGACGCGCATTCCGGGTCAGGGAGGATCCAGGCACGATTCGGGTTCGGGTCGAAGAAGAAGGCCGCGCCCAAGAAGGTGTCGAAGGGCCCAAGCACGGACAGGCCGTTGTGGTACCCCGGCGCGAAGGCGCCGGAGTGGCTGGACGGGAGCCTTGTCGGTGACTACGGGTTCGACCCGTTCGGGCTCGGGAAGCCCGCGGAGTATTTGCAGTTTGAACTGGACTCGCTGGACCAGAACCTGGCCAAGAACGAGGCCGGGATCATCATCGGAACCAGGACAGAGGTTGCGGACGTGAAGTCGACGCCGTTCCAGCCCTACAGCGAGGTCTTCGGCCTCCAGAGGTTCCGCGAGTGCGAGCTCATCCATGGACGCTGGGCCATGCTCGCCACGCTCGGAGCCCTCTCCGTCGAGTGGCTCACCGGTGTCACGTGGCAGGACGCCGGCAAGGTGGAGCTAGTAGAAGGATCATCATACCTTGGGCAACCACTTCCATTCTCAATCACCACATTGATTTGGATCGAGGTTCTGGTAATTGGGTACATAGAGTTCCAGAGGAATGCAGAGCTTGACCCAGAAAAGAGACTGTACCCAGGTGGGAGCTACTTCGACCCTCTTGGTTTAGCCTCAGACCCAGAGAAGAAAGCCACTCTTCAATTGGCAGAGATCAAGCACGCACGTCTTGCCATGGTGGGCTTCTTGGGCTTTGCAGTCCAAGCTGCTGCCACTGGCAAGGGCCCACTCAACAACTGGGCCACCCACTTGAGTGACCCACTTCACACAACCATCATTGACACCTTCTCCTCGTCTTCTTAA 873 0.5945 MATATATAAATSSFMGTRLLDAHSGSGRIQARFGFGSKKKAAPKKVSKGPSTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1272 290 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 4 289 - -
Vra9g1272 290 SUPERFAMILY Chlorophyll a-b binding protein 49 287 - -
Vra9g1272 290 Pfam Chlorophyll A-B binding protein 63 259 IPR022796 -
Vra9g1272 290 Gene3D Chlorophyll a/b binding protein domain 57 290 - -
Vra9g1272 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 289 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1272 Vra-Chr9 20483491 20484935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1272 15 289 Chloroplast and Mitochondria Gene Families AT3G08940 86.232 8.00e-175 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1272 K08915 - gmx:100785180 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1272 9 20483491 20484935 Vra9g1272 9 20483491 20484935 ECH