Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1271 ATGAAGAATGCCAAGGGCAAGGGGGCAGTGAAGGTCTCGAAAGAAGCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGAGGAAGGCTCCTAGTAAGCCTGACAAGGGCAGTGCACCAAAGGCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCAAACAAGCCTAAAAGACCACCTAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGGCAGACCTTTAAGGCTGAGAACCCTAATGTGAAGGCTGTATCTGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCTTTATCCAGTGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTCATGAAAGCTTATGATAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCAGACAAGTCCAAATCTGAGGTGAATGATGAAGATGATGAAGCCAGTGCAGAGGACCATCAAGAGGAGGAAGACGAGGAAGATGATGAAGATGAGGAAGATGAAGATGATGACTGA 522 0.4559 MKNAKGKGAVKVSKEALKPVDDRKVGKRKAPSKPDKGSAPKAKKEKKAKKDPNKPKRPPSAFFVFLEEFRQTFKAENPNVKAVSAVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDEASAEDHQEEEDEEDDEDEEDEDDD* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1271 173 MobiDBLite consensus disorder prediction 8 56 - -
Vra9g1271 173 SUPERFAMILY HMG-box 40 124 IPR036910 -
Vra9g1271 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Vra9g1271 173 CDD HMGB-UBF_HMG-box 55 121 - -
Vra9g1271 173 Gene3D High mobility group box domain 38 140 IPR036910 -
Vra9g1271 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 164 - -
Vra9g1271 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 164 IPR031061 -
Vra9g1271 173 Pfam HMG (high mobility group) box 55 123 IPR009071 -
Vra9g1271 173 MobiDBLite consensus disorder prediction 139 173 - -
Vra9g1271 173 SMART hmgende2 54 125 IPR009071 -
Vra9g1271 173 MobiDBLite consensus disorder prediction 1 59 - -
Vra9g1271 173 MobiDBLite consensus disorder prediction 105 138 - -
Vra9g1271 173 MobiDBLite consensus disorder prediction 87 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1271 Vra-Chr9 20469402 20472561 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vra9g1271 HMG_box 1.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1271 K25507 - gmx:100499704 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1271 9 20469402 20472561 Vra9g1271 9 20469402 20472561 ECH