Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1267 ATGGCAGGTCAAGAGTTTTCAACTGAGAACTTCAATCCAAATGATACCAAGGGAAAGACCATTACTTGCAAAGCTGCTGTGGCATATGGTCCTGGAGAACCCTTTGTGGTGGAACGTGTTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTTCACTTCAATCTGTCATACTGATCTCGGTGCTTGGCAAGGCGAGAATGAGGCTGCACGTTTTTATCCTCGGATTTTCGGCCATGAAGCTTCTGGGATTGTGGAGAGTGTGGGAGAAGGTGTGAATGAGATGAAAGAAGGGGATTTGGTGGTACCAATATTCAATGGGGAATGTGGGGATTGCAAATATTGCAAGAGTGAGAAGACCAACAAGTGTGAGAGATTTGGGGTGAGTATTATGAAGAAGGGAGTGGATTGTGGTGACACAAGGTTTTCTACAATGGATAGAAAACCCATCTTCCATTTTTTGAACACTTCAACTTTCACAGAGTACACAGTGTTGGATTCAGCATGCGTCGTCAAGATTCACGCTAATGGCGATTGGGACTTCAACCCCTTCATCAAAACACTCACCTTGCTTAGTTGTGGTGTCTCTACAGGTGTTGGAGCTGCTTGGAACACAGCAAATGTACATTCTGGTTCAACTGTAGCTGTCTTTGGTTTAGGCGCTGTGGGTCTTGCTGTTGCAGAGGGTGCACGAGCCAGAGGTGCATCCAAAATAATAGGAGTGGATATCAACCCTGAGAAATTCATCAAAGGCCGTGCAATGGGCATCACTGACTTCATCAATCCAAGGGACGATGAGAGGCCAGTATATGAGAGGATCAGAGACATGACTAATGGGGGCGTGCACTATAGTTTTGAATGTGCTGGAAATTTGAATGTTCTAAGGGATGCCTTCTTGTCAGCTCATGAGGGTTGGGGTTTGACTGTGGTATTAGGAGTTCATACATCACCAAAACTGCTTCCAATCCACCCAATGGAATTGTTCGATGGTCGAAAAATTGTAGGATCGGTTTTTGGAGGCTTCAAAGGGAAGACTCAATTACCACATTTTGCCAAACAATGCATGGATGGAGTGGTGAAGTTAGATGGTTTTATCACTCATGAGCTTCCACTGGAGGAGATAAACCAGGCCTTTGATCTTTTGATTGCTGGAAAGTCTCTAAGATGTCTTCTACGCTTCTAA 1194 0.4464 MAGQEFSTENFNPNDTKGKTITCKAAVAYGPGEPFVVERVLVHPPQKMEVRIKILFTSICHTDLGAWQGENEAARFYPRIFGHEASGIVESVGEGVNEMKEGDLVVPIFNGECGDCKYCKSEKTNKCERFGVSIMKKGVDCGDTRFSTMDRKPIFHFLNTSTFTEYTVLDSACVVKIHANGDWDFNPFIKTLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPEKFIKGRAMGITDFINPRDDERPVYERIRDMTNGGVHYSFECAGNLNVLRDAFLSAHEGWGLTVVLGVHTSPKLLPIHPMELFDGRKIVGSVFGGFKGKTQLPHFAKQCMDGVVKLDGFITHELPLEEINQAFDLLIAGKSLRCLLRF* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1267 397 Pfam Zinc-binding dehydrogenase 225 345 IPR013149 -
Vra9g1267 397 Pfam Alcohol dehydrogenase GroES-like domain 49 150 IPR013154 -
Vra9g1267 397 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 16 396 - -
Vra9g1267 397 Gene3D - 202 340 - -
Vra9g1267 397 SUPERFAMILY GroES-like 347 397 IPR011032 -
Vra9g1267 397 SUPERFAMILY GroES-like 16 185 IPR011032 -
Vra9g1267 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 193 361 IPR036291 -
Vra9g1267 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Vra9g1267 397 Gene3D - 26 392 - -
Vra9g1267 397 PANTHER ALCOHOL DEHYDROGENASE 16 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1267 Vra-Chr9 20334776 20349830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1267 49 386 Monolignol Biosynthesis Gene Families AT2G21890 24.929 6.73e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1267 K00001 - gmx:100787307 677.167