Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1265 ATGGAGGTGATGGAGAATGGTGGTGCAAACATGAAGGGGTTGTTGAACAAGGAGATGAGACATGGAAGAACAGCACATAACATGTCGTCTTCTTCACTGCGCAAAAAATCTGACCTAACTCTTGTGTCTAAGGTTAATTTTGGTCCTCTAAAAGACATGTTGGTGAACATTCAAGAGGTTGTTTTGGGAACCAAACTCTCTATTCTCTTACCAGCTGTTCCAATTGCCATTGTTGCTCAATGCTATGGATTTGGAAGATCTTGGGTTTTTGCATTGAGTTTATTGGGACTTACCCCACTTGCTGAAAGACTCAGTTTCTTGACAGAACAAATTGCTTGCTACACCGGTCCCACAGTGGGAGGACTTATGAATGCAACATGTGGGAATAGTACAGAGCTCATTATAGCAATTTTTGCCCTTAGCCGTAATAACGTTGCTTTGGTCAAATATTCTCTTCTGGGTTCTGTAATTTCTAATCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGAGGTCTTGTAAACCTTAGAGAGGAACAGAAATATGATAGAAGACAAGCAGATATGAACTTGCTTATGCTGTTTGTGGCATTGCATTGTCAGTTGCTGCCAATGCTGTTCCATTATGCTGGTGTCTCAGAGGGTGTCACTGCAGAATCATCTCTGCAGTTGTCAAGAGCTGCTAGCATTATTATGGTGATAGCATATTTTGCCTACCTTGTGTTCCAGCTTTGGACTCACAGACAACTATTTGAAGACCAAGATCAAAATGAAGAAGAGGGTGACACTGATTCAGATGAAGCAGTGATAGGATTCTGGAGTGGATGTGTTTGGCTGGTTGGGATCACTGTTATCATTGCAGTGCTTTCTGAATATGTGGTGGAAACAATTGAGGATGCATCTAATTCATGGGGTTTGTCTGTTAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGTAATGCAGCAGAACATGCTGGAGCAATCATATTTGCTTTCAAGAACAAACTGGACATTTCTTTGGGTGTTTGTCTGGGTTCTGCAACTCAAATTAGCATGTTTGTGATTCCCCTTTGTGTGATTCTTGCTTGGATTCTGGGAATTCAAATGGACCTCAGCTTCAACCTCTTAGAAACAGGTTCACTTGCTTTGGCAATAATAACCACAGCTTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTGCTATTTCTGTGCTACATTATCATTGGGGCATGCTTTTTCGTACAAAGAACACCCTCTAACCAAATTAGTGCTTCCGGCATAATGCTCAAATTAACAAGGGAAGCAGTTTTCAGAGCTTAA 1335 0.4135 MEVMENGGANMKGLLNKEMRHGRTAHNMSSSSLRKKSDLTLVSKVNFGPLKDMLVNIQEVVLGTKLSILLPAVPIAIVAQCYGFGRSWVFALSLLGLTPLAERLSFLTEQIACYTGPTVGGLMNATCGNSTELIIAIFALSRNNVALVKYSLLGSVISNLLLVLGTSLFCGGLVNLREEQKYDRRQADMNLLMLFVALHCQLLPMLFHYAGVSEGVTAESSLQLSRAASIIMVIAYFAYLVFQLWTHRQLFEDQDQNEEEGDTDSDEAVIGFWSGCVWLVGITVIIAVLSEYVVETIEDASNSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVCLGSATQISMFVIPLCVILAWILGIQMDLSFNLLETGSLALAIITTAFTLQDGTSHYMKGLVLFLCYIIIGACFFVQRTPSNQISASGIMLKLTREAVFRA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1265 444 TIGRFAM cax: calcium/proton exchanger 69 418 IPR004798 GO:0006816|GO:0015369
Vra9g1265 444 Gene3D - 117 259 IPR044880 -
Vra9g1265 444 Gene3D - 262 418 IPR044880 -
Vra9g1265 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vra9g1265 444 Pfam Sodium/calcium exchanger protein 277 413 IPR004837 GO:0016021|GO:0055085
Vra9g1265 444 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016021|GO:0055085
Vra9g1265 444 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 430 - -
Vra9g1265 444 TIGRFAM caca2: calcium/proton exchanger 51 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1265 Vra-Chr9 20228568 20233348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1265 3 444 Antiporters AT2G38170 63.839 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1265 K07300 - gmx:100797538 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1265 9 20228568 20233348 Vra9g1265 9 20228568 20233348 ECH