Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1254 ATGCAAATGGCTTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCCCGAAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACCTGTGCCTCTATGGACATCCGAATGAGACTTGGGAGGTGACTTTGCCAGCGGAGGAAGTTCCGCCGGAGCTTCCGGAGCCTGCTCTTGGAATCAATTTTGCAAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCGGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGGTTAGTGTTGTTAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGATATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGGCCCTAA 732 0.4877 MQMASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKVSVVRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1254 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Vra9g1254 243 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Vra9g1254 243 PANTHER CPG BINDING PROTEIN 3 242 IPR045104 GO:0006355|GO:0042393
Vra9g1254 243 SMART PHD_3 189 237 IPR001965 -
Vra9g1254 243 MobiDBLite consensus disorder prediction 148 169 - -
Vra9g1254 243 CDD PHD_AL_plant 189 239 IPR044104 -
Vra9g1254 243 Pfam PHD-finger 190 237 IPR019787 -
Vra9g1254 243 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 242 - -
Vra9g1254 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Vra9g1254 243 SUPERFAMILY FYVE/PHD zinc finger 178 241 IPR011011 -
Vra9g1254 243 MobiDBLite consensus disorder prediction 137 179 - -
Vra9g1254 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 237 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1254 Vra-Chr9 19922309 19925554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1254 4 242 Alfin-like Transcription Factor Family AT5G05610 76.250 5.63e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vra9g1254 Alfin 2.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1254 - - gmx:100779170 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1254 9 19922309 19925554 Vra9g1254 9 19922309 19925554 ECH