Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1253 ATGGGTCCAAACCTAGAATGTCGTTTGTACGAGGCGAGGTACCCGAAGGTGGACATGCCGATGATGATACAGGCGAAGAACATCGCGGACATAGCTGCCTACTTGTCACTTTTGGAGTACAACAACATCGAGGGTATGATCTTGTTCTCGGAGCTCTCCCGCGTTCAGATTTGGAGCGTCAACAACCTCATCAAGGTGGGGCACATCGAGCCCGTCATAGTCCTCCGTGTCGACAAGGAAAAGGGTTACATCGATCTCAGCAAGCGTAGGGTCTCCGAAGAGAACATTCAGGCCTGCGAGGAGAGGTTTTTTTACCTGTTGAAGAAAGATTTTTGGAAGAGATCCAGGGCATCTCACTGTTGA 363 0.5014 MGPNLECRLYEARYPKVDMPMMIQAKNIADIAAYLSLLEYNNIEGMILFSELSRVQIWSVNNLIKVGHIEPVIVLRVDKEKGYIDLSKRRVSEENIQACEERFFYLLKKDFWKRSRASHC* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1253 120 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Vra9g1253 120 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 2 103 IPR011488 GO:0003723|GO:0003743
Vra9g1253 120 SUPERFAMILY Nucleic acid-binding proteins 14 93 IPR012340 -
Vra9g1253 120 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Vra9g1253 120 Pfam S1 RNA binding domain 27 89 IPR003029 GO:0003676
Vra9g1253 120 Gene3D - 3 91 IPR012340 -
Vra9g1253 120 PANTHER BNAC04G04870D PROTEIN 2 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1253 Vra-Chr9 19907220 19909084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1253 3 103 Eukaryotic Initiation Factors Gene Family AT2G40290 81.188 2.25e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1253 K03237 - gmx:100815696 170.629