Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1252 ATGGGAGTGGACTATTACAAACTTCTTCAGGTAGATCGAAGTGCCAGCGATGAGGATCTCAAGAAAGCTTATCGAAGGCTTGCTATGAAGTGGCACCCTGATAAGAACCCTAACAATAAAAAGGATGCTGAAGCCAAATTCAAGCAAATCTCGGAAGCTTATGATGTTTTGAGTGATCCACAAAAGAGGGCAGTGTATGATCAGTATGGTGAGGAGGGATTGAAAGGGCAGGTGCCACCTCCGGGTGCTGGTGGATTTTCCGGTGGCACTGATGGTGGATCAACGACTTTCCGGTTCAACCCTAGAAGTGCAGATGATATATTTTCGGAGTTCTTTGGGTTTTCGAGTCCCTTTGGAATGGGGGATATGGGTGGCCGTGCCGGTCCATCTGGCTTTCCCAGATTTGGGGATGACATTTTTACCTCTTTTAGTAGGAATGCGGCTGGAGAAGGCTCTGTCAATGTGCCAAGGAAAAGTGCACCTATTGAGAGAACCTTGCAATGCAGTTTGGAGGATTTATACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTGATTGATGCTAGTGGGAGGCCCACCACTGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAACGAACAAAGAGGAGTTATACCCGCTGATCTTGTTTTTATTATTGATGAAAAACCGCATGGTGTCTTCAAAAGGGATGGCAATGATCTTGTTGTCACACAGAAAATATCCCTTGTTGAAGCTCTGACTGGTTACACCGCACAGCTGACAACTCTTGATGGCCGGAATCTTACCGTAACCACCACCTCCATCATCAGTCCGACATACGAAGAAGTGATCAAAGGAGAGGGTATGCCCATTCCCAAGGAACCTTCCAAAAGGGGAAACTTGAGGATCAAGTTCAATATCAAGTTCCCCTCTAGACTTACATCAGAGCAGAAAACTGGCATTAAACGATTATTGACATCTCCATAA 1017 0.4484 MGVDYYKLLQVDRSASDEDLKKAYRRLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSGGTDGGSTTFRFNPRSADDIFSEFFGFSSPFGMGDMGGRAGPSGFPRFGDDIFTSFSRNAAGEGSVNVPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVIDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLTVTTTSIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRLLTSP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1252 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vra9g1252 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vra9g1252 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vra9g1252 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vra9g1252 338 CDD DnaJ 4 59 IPR001623 -
Vra9g1252 338 Pfam DnaJ domain 4 67 IPR001623 -
Vra9g1252 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 336 - -
Vra9g1252 338 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
Vra9g1252 338 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Vra9g1252 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 329 IPR008971 GO:0006457|GO:0051082
Vra9g1252 338 SMART dnaj_3 3 62 IPR001623 -
Vra9g1252 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vra9g1252 338 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 336 - -
Vra9g1252 338 CDD DnaJ_C 160 323 - -
Vra9g1252 338 MobiDBLite consensus disorder prediction 73 98 - -
Vra9g1252 338 Gene3D - 161 239 - -
Vra9g1252 338 Gene3D DnaJ domain 3 123 IPR036869 -
Vra9g1252 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vra9g1252 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 241 IPR008971 GO:0006457|GO:0051082
Vra9g1252 338 Gene3D - 241 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1252 Vra-Chr9 19893360 19897648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1252 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.77e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1252 K09510 - gmx:100777607 603.979