Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1250 ATGGAGGGTCATCATCTCCATCGCCACCATGGGCAACAACAACAGCAACAAAGGCTTCAGCCTCAGAATACGAGTGCCAACGTTGATGCCACTGATAGGTTTCCCCAATGGAGTATCCAAGAGACTAAGGAGTTTCTCGTGATTCGTGCAGAGCTGGATCAGACTTTCATGGAGACTAAGAGGAACAAGCAGTTGTGGGAAGTGATCTCGACGAGAATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGCTACAAGGGGTTTGAAACAATGGAGCAAGAAGCGACGAGGCAGCAATTCCCATTTTACAATGAATTCAGTGCGATTTTCACGGCAAGGATGCAGAGAATGCTGTGGGCTGAAGCTGAGGGTGGGTCGAAGAAGAACAAGGGGACGCAGCTCTCATCGGATGAGGAAGAAGATGGCTATGAAGAGAGTGCAGAAGCTGGTGGGGGAAGAAAGAAGAAAAAAGCAAAGATAGCTAGTGGGGGTGGTGGTGGTGGTGGTAACAGTTTGAACAGTTTGAAGGAGATTTTGGAGGAGTTCATGAGGCAACAGATGCAGATAGAAGCACAATGGATGGAAGCATTTGAAGCAAGGGAAAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAGCCATGGAAGTGTTGGAGAATGAGAGGATAATGATGGAAGAAAGATGGAGAGAAAGAGAGGAACAAAGGAGGATCAGAGAAGAAGCTAGGGCTGAGAAAAGGGATGCTCTAATCACAGCTTTGTTAAACAAGCTAGAGAGGCAAGAAATGTGA 825 0.4715 MEGHHLHRHHGQQQQQQRLQPQNTSANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISTRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEATRQQFPFYNEFSAIFTARMQRMLWAEAEGGSKKNKGTQLSSDEEEDGYEESAEAGGGRKKKKAKIASGGGGGGGNSLNSLKEILEEFMRQQMQIEAQWMEAFEARENERRLKEMEWRQAMEVLENERIMMEERWREREEQRRIREEARAEKRDALITALLNKLERQEM* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1250 274 Pfam Myb/SANT-like DNA-binding domain 36 119 IPR044822 -
Vra9g1250 274 MobiDBLite consensus disorder prediction 134 183 - -
Vra9g1250 274 Gene3D - 37 98 - -
Vra9g1250 274 CDD GT1 35 98 - -
Vra9g1250 274 MobiDBLite consensus disorder prediction 1 26 - -
Vra9g1250 274 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 273 - -
Vra9g1250 274 ProSiteProfiles Myb-like domain profile. 37 93 IPR001005 -
Vra9g1250 274 Coils Coil 183 203 - -
Vra9g1250 274 PANTHER - 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1250 Vra-Chr9 19681984 19684195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1250 4 271 Trihelix Transcription Factor Family AT2G38250 54.152 1.02e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra9g1250 Myb_DNA-bind_4 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1250 - - gmx:100818384 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1250 9 19681984 19684195 Vra9g1250 9 19681984 19684195 ECH