Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1227 ATGAACTTCATTCTTTTTCTAATGAGTTGCATATTTCATAAAGTATTTTTTCCTTCTGAATCAGTTTTTATAGCAGCAGAGACTTCGTCCCTTACACAATCCCAGTTCCTCAGTTACAGAGAGACCTTAGTTTCCCCCGGTGGAATGTTTGAACTCGGTTTCTTCAACCTAGGAAATCCCAACAAAGCCTACCTCGGGATCTGGTACAAGAATATCCCTCTACAAAACATAGTATGGGTTGCAAACAGTGCCATCTCAATCAAGGATTCTTCTGCCATCTTGAAACTAAACAGTTCTGGCAATTTGGTCCTCACACAAAACAACACGGTTGTCTGGTGCACAAGTTCTGAAAAAAAGGCACAGAATCCAGTAGCAGAGCTCTTGGACTCTGGAAATCTTGTGATTAAAGATGAAAATGAAGCAAAGGCAGAGGAATATCTTTGGCAAAGCTTTGATCATCCATCTAATACATTGGTGCCAGAAATGAAGATTGGATGGGACCTCAAAAGAAATGTTAGTGTTTTCCTGAAAGCTTGGAAAACTGATGATGATCCGACACCAGGAGACTTATCGTGGGGGATTGTTCTACATCCATATCCTGAGATGTATATGATGAACGGACCAAAAAAGCAATGGAGACTTGGGCCATGGAATGGTTTGCGTTTCAGTGGAAGGCCATTTAACACCATTCGCCGTTATGAGTTTGTCTCCAACCAGGAAGAGATTTATTTCAGATGGAGCCCCGTAGAAGCTACTTCAGTGAAAGTTGTACTGAACCAAACTGCACAAGCGCGTCAACGCTATGTCTGGTCAGAGAAATCATGGATTTTGAAATGGACAATGCCAGTAGACTACTGTGATAATTACGGAGTTTGTGGAGCAAATACTTATTGCAGCACTTTTGCATCAACAATGTGTCATTGCTTAAAAGGGTTCAAACCTAAGGATTCTCCTGAGGAATGGAACTCAATGGAATGGTCTCAAGGATGTGTCCTCAAACATCCACTTAGCTGCAAAGACAAGTTGAGAGATAGTTTTTTCTTCATGGATGGCTTGAAAGTGCCGGATACTGAATATACGATTGTGGATGAGACTATTGACTTAAAACAATGCAGCGCCAAGTGCTTGAATAATTGTTCTTGCATGGCATATACCAATTCAAATATCAGTGGAGCTGGCAGTGGCTGTGTCATGTGGTTTGGTGATTTATTTGACATCAAACTCTATTCAAATCCAGAAATGGGGCAGCGCCTATATATAAGGTTCAATCCTACAAAATTAGAGTCTATCAGTCACAAGAAGAACCCTAAAATAATATATGTCACATCCATTGCTGCAACTTTTGGAGTGATGCTTGCTATTTATTTTGTCTACAGAAGGAACACTTCAGACAAGTCAAAGACAAAAGAGAACATTGAAAGACAGCTACGTATTCTGGATGTGACTTTGTTTGATCTTTCTTCAATCAAAACCGCCACTAACAATTTTTCATTGAACAATAAGATTGGACAGGGTGGTTTTGGACCTGTATATAAGGGAAAATTAGTGGATGATCGAGACATTGCTGTCAAGAGACTTTCACAAAGCTCTGGACAAGGAATCACTGAGTTCATGACAGAAGTGAATGTGATAGCAAAGCTTCAACACCGAAATCTTGTAAAGCTCCTTGGTTGTTGCTTTCAAGGAAAAGAAAAGTTACTAGTTTATGAATACCTGGTCAATGGCAGCCTAGACACCTTCCTCTTTGATAAAGTAAAAGGTAAATTGCTGCAATGGCCCCAACGCTTCCACATAATAGTTGGGATTGCCAGAGGGCTTTTGTATCTACACCAAGATTCCCAGTTGAGGATTATTCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGACCAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCCAAAGCTTTTGGAGGAGACCAAATAGAAGGAAACACAAATAGAGTTGTTGGGACTTATGGATACATGGCTCCAGAATATGCTGTTGATGGACTATATTCCATCAAATCGGACGTTTTCAGCTTTGGTATTTTGTTGTTGGAGATTGTATGTGGCACCAAAAATAGAGCTCTCTGCCATGGAAACCAAACTCTGAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCAAAATGCCTTACAGCTGATTGACTCAATTATAAAAGACTCATGTGTGGTCTCAGAAGTACTACGATGCATCCATGTTAGTCTGTTGTGCGTGCAACAATACCCGGATGATAGGCCAACCATGACATCGGTTATTCAAATGTTAGGGAGTGAAATGGAACTGGTTAACCCAAAAGAGCCTGGTTTCTTTCCCACAAAGATTTCGGACCAAGGAAGGTTAAACTTAAATATAAAACAAGAGACTTCAAATGATGAATTAACCATTTCCTCATTCAAGGGCCGGTGA 2442 0.4005 MNFILFLMSCIFHKVFFPSESVFIAAETSSLTQSQFLSYRETLVSPGGMFELGFFNLGNPNKAYLGIWYKNIPLQNIVWVANSAISIKDSSAILKLNSSGNLVLTQNNTVVWCTSSEKKAQNPVAELLDSGNLVIKDENEAKAEEYLWQSFDHPSNTLVPEMKIGWDLKRNVSVFLKAWKTDDDPTPGDLSWGIVLHPYPEMYMMNGPKKQWRLGPWNGLRFSGRPFNTIRRYEFVSNQEEIYFRWSPVEATSVKVVLNQTAQARQRYVWSEKSWILKWTMPVDYCDNYGVCGANTYCSTFASTMCHCLKGFKPKDSPEEWNSMEWSQGCVLKHPLSCKDKLRDSFFFMDGLKVPDTEYTIVDETIDLKQCSAKCLNNCSCMAYTNSNISGAGSGCVMWFGDLFDIKLYSNPEMGQRLYIRFNPTKLESISHKKNPKIIYVTSIAATFGVMLAIYFVYRRNTSDKSKTKENIERQLRILDVTLFDLSSIKTATNNFSLNNKIGQGGFGPVYKGKLVDDRDIAVKRLSQSSGQGITEFMTEVNVIAKLQHRNLVKLLGCCFQGKEKLLVYEYLVNGSLDTFLFDKVKGKLLQWPQRFHIIVGIARGLLYLHQDSQLRIIHRDLKASNVLLDQKLNPKISDFGMAKAFGGDQIEGNTNRVVGTYGYMAPEYAVDGLYSIKSDVFSFGILLLEIVCGTKNRALCHGNQTLNLVGYAWTLWKEQNALQLIDSIIKDSCVVSEVLRCIHVSLLCVQQYPDDRPTMTSVIQMLGSEMELVNPKEPGFFPTKISDQGRLNLNIKQETSNDELTISSFKGR* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1227 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vra9g1227 813 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 37 812 - -
Vra9g1227 813 Pfam S-locus glycoprotein domain 212 315 IPR000858 GO:0048544
Vra9g1227 813 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Vra9g1227 813 Pfam PAN-like domain 340 406 IPR003609 -
Vra9g1227 813 Pfam D-mannose binding lectin 77 180 IPR001480 -
Vra9g1227 813 Gene3D - 22 152 IPR036426 -
Vra9g1227 813 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Vra9g1227 813 SMART blect_4 34 154 IPR001480 -
Vra9g1227 813 Pfam Protein tyrosine and serine/threonine kinase 497 767 IPR001245 GO:0004672|GO:0006468
Vra9g1227 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 812 - -
Vra9g1227 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 185 IPR036426 -
Vra9g1227 813 CDD B_lectin 34 154 IPR001480 -
Vra9g1227 813 ProSiteProfiles Protein kinase domain profile. 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1227 813 CDD PAN_AP_plant 334 421 - -
Vra9g1227 813 Gene3D Phosphorylase Kinase; domain 1 457 571 - -
Vra9g1227 813 SMART serkin_6 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1227 813 SUPERFAMILY Protein kinase-like (PK-like) 481 781 IPR011009 -
Vra9g1227 813 CDD STKc_IRAK 502 767 - -
Vra9g1227 813 Gene3D Transferase(Phosphotransferase) domain 1 572 777 - -
Vra9g1227 813 SMART ntp_6 341 422 IPR003609 -
Vra9g1227 813 PIRSF SRK 1 813 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1227 Vra-Chr9 19095112 19099028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1227 484 808 Receptor kinase-like Gene Family AT4G23150 55.521 1.49e-119 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra9g1227 PK_Tyr_Ser-Thr 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1227 - - gmx:100808227 1284.24