Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1226 ATGGACATGATGGACGTGGATGAAACTTCTGCACCGAGAGAGGGCAAGCCCGTTTTGGTGATCCTGGTAGGAGCACCCGGGAGTGGTAAATCCACCTTCGGCGAAGATGTAATGCGTTCATCTACTCGCCACTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGCAAAGCAGGAACTAAAGCTCAGTGCCTAAGCAGTGCAACTAGTGCATTGAAGGATGGAAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGGTCAGAATTCATAAAGCTTGGTGGTGGACTCCAAATAGACATCCATGCAGTTGTACTTGATCTTCCTGCAAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGAGGAAGAGCGGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAACCGGATAACATTTTGTCAGAATGAGAATGACGTAAAAAATGCGATTAATACATACAGCTCACTTGGGCCACTGGATAATCTTCCACATGGCTGCTTTGGCCAGAAGAATACAGATTCCAAAATTCAAGTTGGCATAATGAAGTTCCTAAAAAGAGCAGAGGTCCCACTTGCTGCTGCACCTACAACGAGTGGCACTGAAGAGCCTACTTCCCAGACTCCGAGAAATAATTTGTACTGCAAAGATAAGGAAGCACTTTCCTCAATTTCAGATACTGACAACTTAGAGACAAAGGAAGTAGAAAGGCAAGAAGTTGGTTCTGCTGGTTCGCATGCCAATCAAGTTTGTCCGGATGATATTCCAACTCTGGCATTTCCCTCTATTTCAACATCTGATTTCCAATTCAATCTTGAGAAGGCAGCTGATATTATCGTTGAGCAGGTTGCAGAGTTCTTAAATAAGTTTAGGAATGCCAGACTTGTTCTTGTTGACTTATCTCATAAGTCAAAGATTTTGTCCTTAGTTAAAGCCAGAATTGCAGAAAAAAACATGGACACCCAAAAGTTTTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGCAATGCCATTGCTAATGCTGCCAACTGGAGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCAGAACTGGAGTCTGCAACAAAAGATAAAGTAAAATCTCTGTCACCTGGGAATGCTGCTGTTGTCCCTCTGCCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCTTATACTTCACTCTTTGATGGTTTTGCGTCTATTTTGCGGAACCACCCAAGGATACCAGAGGGAAAAAGTGAAAAGCTTGAAAGGAAGTCATTGGAGTTGCCGGTTCAGTCTGATTGTTCTTCCAGAAAATATTTTACCGGTACTGATCAAAAGAGTAAGAGAAGTGATGATCATGGATCAGAGAAAAGCAAGAAATGCAAGGGAACTCAGGATGACTTAGGATTGCCCTTTACTGATTCTAAGGGTGAAAAGGTAGATTCAGAGCATAGAAGAATAGAGAGGAGCAGGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGGTGATTTGCTTGAAATTTCCGATGATGTTGTTGTATTGAATGATATCTATCCAAAGGCGCAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGACTGCCTCGCTGATGTCCAAAAGAAGCACCTTCAGTTATTGAACATGATGCACGATGTGGGTTTAAAGTGGGTTGAGAAGTTCTTAAGCGAGAATGCTTCTCTGGTATTTCGACTTGGGTATCACTCGGCACCATCGATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAACACAATTAAAGAATAAGAAGCATTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTTGATGTAATGGATGAGGTCTCTAGTGATGGGAAGGCAACGTTGAAAGATGATGACAAGCTACTCTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCCCATCCAAACATTCCCCGTTTAAAATCTCATATAAGCAGCTGCCAATCCCCATTTCCTGCATACCTACTTCAGAATGGACGTTTAGTGCATGCTCCCGGGGAACCTCGCAACAGTGTACAGTAG 2295 0.4292 MDMMDVDETSAPREGKPVLVILVGAPGSGKSTFGEDVMRSSTRHWVRVCQDTIGNGKAGTKAQCLSSATSALKDGKSVFIDRCNLDREQRSEFIKLGGGLQIDIHAVVLDLPAKLCISRSVKRTGHEGNLQGGRAAAVVNRMLQHKELPKLSEGFNRITFCQNENDVKNAINTYSSLGPLDNLPHGCFGQKNTDSKIQVGIMKFLKRAEVPLAAAPTTSGTEEPTSQTPRNNLYCKDKEALSSISDTDNLETKEVERQEVGSAGSHANQVCPDDIPTLAFPSISTSDFQFNLEKAADIIVEQVAEFLNKFRNARLVLVDLSHKSKILSLVKARIAEKNMDTQKFFTHVGDITHLYSRGGLRCNAIANAANWRLKPGGGGVNAAIFNAAGPELESATKDKVKSLSPGNAAVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILQDAYTSLFDGFASILRNHPRIPEGKSEKLERKSLELPVQSDCSSRKYFTGTDQKSKRSDDHGSEKSKKCKGTQDDLGLPFTDSKGEKVDSEHRRIERSRSKAWGSWAQALHQIAMHPEKHKGDLLEISDDVVVLNDIYPKAQKHVLVLARTGGLDCLADVQKKHLQLLNMMHDVGLKWVEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESTQLKNKKHWNSFNTAFFRDSVDVMDEVSSDGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSPFPAYLLQNGRLVHAPGEPRNSVQ* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1226 764 ProSiteProfiles Macro domain profile. 331 569 IPR002589 -
Vra9g1226 764 SUPERFAMILY HIT-like 555 722 IPR036265 -
Vra9g1226 764 SUPERFAMILY Macro domain-like 263 311 IPR043472 -
Vra9g1226 764 MobiDBLite consensus disorder prediction 535 549 - -
Vra9g1226 764 MobiDBLite consensus disorder prediction 500 549 - -
Vra9g1226 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 163 IPR027417 -
Vra9g1226 764 Gene3D Leucine Aminopeptidase, subunit E, domain 1 244 322 IPR043472 -
Vra9g1226 764 PANTHER APRATAXIN 16 757 IPR026963 GO:0003677|GO:0006281|GO:0033699
Vra9g1226 764 Pfam C2HE / C2H2 / C2HC zinc-binding finger 683 736 IPR032566 -
Vra9g1226 764 Gene3D - 3 176 IPR027417 -
Vra9g1226 764 SMART YBR022w_8 343 485 IPR002589 -
Vra9g1226 764 Gene3D - 560 741 IPR036265 -
Vra9g1226 764 SUPERFAMILY Macro domain-like 323 463 IPR043472 -
Vra9g1226 764 Pfam AAA domain 19 144 - -
Vra9g1226 764 PANTHER APRATAXIN-RELATED 16 757 - -
Vra9g1226 764 Pfam Scavenger mRNA decapping enzyme C-term binding 568 678 - -
Vra9g1226 764 Pfam Macro domain 366 449 IPR002589 -
Vra9g1226 764 Gene3D Leucine Aminopeptidase, subunit E, domain 1 323 470 IPR043472 -
Vra9g1226 764 MobiDBLite consensus disorder prediction 505 527 - -
Vra9g1226 764 ProSitePatterns HIT domain signature. 647 665 IPR019808 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1226 14 753 C2H2 Transcription Factor Family AT5G01310 59.459 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1226 K10863 - gmx:100786762 1298.88