Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1223 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCTCCAGTTTGTTTAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCCGTCAACATGCGTGGTCTGCTTCTTCCGTCGGCTAATCAACTTCACCTTGGCCATACCTTCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGTAATGCACCTTCCGCAAACATGGTGATGAATCAGATGCCAAACCCTAATGATTTGGTCACTAGCACCATGCGAGGAGGACCCGAAGAAACTCCCAAGCCTCCATCGGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCCTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAACCCTGATATAAGTCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGATGTGCTTATCAAAGATGGGTTTTTCGCACCAGCTAATGTAGGTGTCTCTCCCTTCTAG 648 0.4877 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPQNLLEEIRNAPSANMVMNQMPNPNDLVTSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLIKDGFFAPANVGVSPF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1223 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Vra9g1223 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Vra9g1223 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Vra9g1223 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Vra9g1223 215 MobiDBLite consensus disorder prediction 104 135 - -
Vra9g1223 215 PANTHER PROTEIN YABBY 4 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1223 Vra-Chr9 19019072 19021577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1223 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 62.381 1.62e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vra9g1223 YABBY 7.9e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1223 K25796 - gmx:100781267 434.876