Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1218 ATGGCATCACTATTTTCATCTTCATCTTCATTTTCCTTACTAATATCCCTTCTACTTATTCCCTTGCTATTTTCCTCTGTGGCCTTCTCTTACTCATTGAAAGATATTCAATCATGGTGCAACCAAACCCCTTACCCTCAACCTTGTGAGTACTACTTGACCAACCATGCCTTCAACACACCTATCAAAAGCAAATCCGATTTTCTCAAAGTTTCCCTTCAACTTGCCTTAGATAGAGCAGAAAGGGGTAAACTAAACACGCATTCCATAGGGCCAAAGTGCCGCAACGACCATGAAAAATCTGCATGGAACGATTGCATTCAACTCTACGAGTACACCATTCAAAGACTCAACAAAACTCTTGACTCCCACACCAAATGCACACAAACTGATGCACAAACATGGCTCAGCACAGCCCTCACAAACCTCGAGACATGTAGAATCGGCTTCTATGAACTTGGTGTCACAGATTACATCCTACCCTTATTATCCAATAATGTCACAAAGTTGTTGAGCAACACCCTCTCTCTCAACAAGGACCCCAATACCCAGTTCAAACCACCTAGTACCCAAGAGGGATTCCCTACATGGGTGAAACCAAGTGATAGAAAGTTGCTGCAATCATCTTCAGCAGCTTCTAAGGCTAATGTGATTGTGGCCAAAGATGGTTCTGGAAAGTACACAACAGTGAAAGCTGCTGTTGATGCTGCTCCAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTATACAATGAACAAGTTGAGGTTAAATCAAAGAATATTATGTTGGTTGGAGATGGAATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCTCCACAACATTCAATTCAGCCACTGTTGCTGCTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGGAACACTGCAGGAGCAGCAAATCATCAAGCAGTGGCATTGCGTTCTGGTTCAGATCTTTCAGTATTTTATAGATGCAGTTTTGAAGGTTATCAAGACACATTATATGTTCATTCAGAGAGGCAATTCTACAGAGAATGTGACATATATGGCACAGTGGATTTCATCTTTGGCAATGCTGCTGTGGTTTTGCAAAACTGCAACATCTATGCCAGAAGCCCTCCTCAGAAAACCATCACAGTCACTGCTCAGGGTAGAACTGACCCTAACCAGAACACTGGAATCATCATCCACAACTCCAAGGTGACTGGTGCCTCAGGCTTCAACCCTAGTTCTGTGAAATCATACCTTGGCAGGCCCTGGAAGCAGTACTCAAGAACAGTGTTCATGAAGACCTATCTTGACAGTTTGATCAACCCTGCTGGATGGATGGAATGGGATGGTAACTTTGCTTTGGACACTTTGTATTATGCAGAATATGCAAACACTGGTCCTGGCTCCAGCACTGCCAATAGGGTCACTTGGAAGGGTTACCATGTTCTCACAAGCGCATCTCAGGCCACACCTTTTACTGTTGGAAACTTCATTGCTGGCAACTCTTGGATACCTAACACTGGTGTTCCTTTTACCTCTGGACTTTAG 1566 0.4342 MASLFSSSSSFSLLISLLLIPLLFSSVAFSYSLKDIQSWCNQTPYPQPCEYYLTNHAFNTPIKSKSDFLKVSLQLALDRAERGKLNTHSIGPKCRNDHEKSAWNDCIQLYEYTIQRLNKTLDSHTKCTQTDAQTWLSTALTNLETCRIGFYELGVTDYILPLLSNNVTKLLSNTLSLNKDPNTQFKPPSTQEGFPTWVKPSDRKLLQSSSAASKANVIVAKDGSGKYTTVKAAVDAAPSSSGRYVIYVKSGVYNEQVEVKSKNIMLVGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARSPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWKQYSRTVFMKTYLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSSTANRVTWKGYHVLTSASQATPFTVGNFIAGNSWIPNTGVPFTSGL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1218 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 179 IPR035513 -
Vra9g1218 521 ProSitePatterns Pectinesterase signature 1. 240 259 IPR018040 -
Vra9g1218 521 PANTHER PECTINESTERASE 11 520 - -
Vra9g1218 521 SUPERFAMILY Pectin lyase-like 210 520 IPR011050 -
Vra9g1218 521 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Vra9g1218 521 SMART PMEI_2 31 177 IPR006501 GO:0004857
Vra9g1218 521 Gene3D - 210 521 IPR012334 -
Vra9g1218 521 CDD PMEI-like_3 38 179 - -
Vra9g1218 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 180 IPR035513 -
Vra9g1218 521 PANTHER PECTINESTERASE 11 520 - -
Vra9g1218 521 Pfam Plant invertase/pectin methylesterase inhibitor 35 177 IPR006501 GO:0004857
Vra9g1218 521 Pfam Pectinesterase 216 507 IPR000070 GO:0030599|GO:0042545
Vra9g1218 521 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1218 Vra-Chr9 18532320 18535976 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1218 14 521 Carbohydrate Esterase AT2G45220 67.843 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1218 K01051 - gmx:100794948 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1218 9 18532320 18535976 Vra9g1218 9 18532320 18535976 ECH