Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1214 ATGCATCTCATCACAATACTATTCATTGCTCTCTCTAGCAGAAAAAAGAAAATGGCTACTTATGCCACCACCGCCACCACAGTCACTGCCACCACCTTGTTTCTCCTTCTTGGCATGGCCACCACCACCCTTTGCCTCCAAGAAAAGGGTGTCCTCCAAATGGCTCAGAATCATGTTTCTCAAGCCAAAAACTGGGTTGCAAACGCTTTGACATTGCATGGCTATGAAAGCCAAAGCCTGAGCCTTTCTGATCACCAAACAAGTGTTATAGCCCTCAGAGACTGTTCCAAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGATGTCTCAGAACAGCACTTACACCAGAGAAGATGCACTCACATGGATAAGTGCTGTGATGACAAATCACAGGACCTGCTTGGATGGTCTGCAAGAAAAAGGGTATGTTGAAGCTCAGATTCTCGATAGAAACTTGACCGTGTCGCTTAAGCAAGCTCTCATTTTGTATTCAAGGAACAAAGTCATAGCCAAAGGACCACCCCTTCCGGGAACAATATCCAAAGGTTCTGGTATTTTAGAATCATGGAGTGAAGCAAGCTATAAGCCAGATTTCACAGTGGCACAGGATGGTTCAGGGACACACAAAACAATCCAAGCAGCAGTGAATGCACTTGCTGCAATGGGAAATAACCGTCCTGCAAGAGCAATCATATACGTAAAATCAGGGGTCTATAATGAGAAGGTGAATATTGGACAGAAACTGCATAATGTGATGTTTGTAGGAGATGGCATAGACAGAACTGTTGTTACTGGCAACAGAAATGTAGTTCAAGGATCCACCACTCTGAGCTCAGCCACATTTGATGTATCAGGAGATGGATTTTGGGCTAGAGACATGACATTTGAGAACAGTGCAGGTCCAGAAAAGCACCAAGCAGTGGCACTGAAGGTTAGTTCAGACTTATCAGTGTTCTACAGGTGCAGCTTCAAGGGCTACCAAGATACTCTTTACGTGCTCTCAAACCGCCAATTCTACCGTGACTGTCAAATCTACGGAACCATAGATTTCATATTCGGGGATGCTGCAGCGGTGCTACAGAACTGTGACATCTTAGTGAGGAAGCCGTTGAGCCAGCAATCGAACTTCATCACAGCACAAGGAAGAGATGACCCGAACAAGAACACAGGGATTGCAGTGCAAAGTTGCAGAGTTAGAGCAGCATCAGAGTTTGTCAGCCTGAAGAATTCTCAGAAGACATTCCTGGGAAGGCCATGGAGGAAGTACTCAAGGACTGTGTTCATGAAGAGTGAGTTGGATGGAATGATTGAGGCAAAAGGGTGGGGTGAATGGAGTGGAAGTTTTGCACTTTCAACGTTGTTCTATGGAGAGTATATGAACACAGGAGGTGGTGCTTCTACAGAAAATAGGGTGAGATGGCCTGGTTTTCATGTGCTGAGAAGTGCTACTGAGGCATCACCTTTCACAGTGAGACAGTTTGTGCAAGGAGAAAGGTGGATTCCTGCTACTGGGGTGCCATACTCTTCTGGAATATGA 1542 0.4565 MHLITILFIALSSRKKKMATYATTATTVTATTLFLLLGMATTTLCLQEKGVLQMAQNHVSQAKNWVANALTLHGYESQSLSLSDHQTSVIALRDCSKLYEESESRLSHMMSQNSTYTREDALTWISAVMTNHRTCLDGLQEKGYVEAQILDRNLTVSLKQALILYSRNKVIAKGPPLPGTISKGSGILESWSEASYKPDFTVAQDGSGTHKTIQAAVNALAAMGNNRPARAIIYVKSGVYNEKVNIGQKLHNVMFVGDGIDRTVVTGNRNVVQGSTTLSSATFDVSGDGFWARDMTFENSAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVLSNRQFYRDCQIYGTIDFIFGDAAAVLQNCDILVRKPLSQQSNFITAQGRDDPNKNTGIAVQSCRVRAASEFVSLKNSQKTFLGRPWRKYSRTVFMKSELDGMIEAKGWGEWSGSFALSTLFYGEYMNTGGGASTENRVRWPGFHVLRSATEASPFTVRQFVQGERWIPATGVPYSSGI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1214 513 CDD PMEI-like_4 51 166 - -
Vra9g1214 513 PANTHER PECTINESTERASE 28 511 - -
Vra9g1214 513 Pfam Plant invertase/pectin methylesterase inhibitor 52 146 IPR006501 GO:0004857
Vra9g1214 513 Gene3D - 193 513 IPR012334 -
Vra9g1214 513 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Vra9g1214 513 SMART PMEI_2 50 164 IPR006501 GO:0004857
Vra9g1214 513 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 28 511 - -
Vra9g1214 513 Pfam Pectinesterase 199 499 IPR000070 GO:0030599|GO:0042545
Vra9g1214 513 SUPERFAMILY Pectin lyase-like 197 512 IPR011050 -
Vra9g1214 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 157 IPR035513 -
Vra9g1214 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 165 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1214 Vra-Chr9 18368351 18372233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1214 18 513 Carbohydrate Esterase AT3G60730 51.036 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1214 K01051 - gmx:100792852 798.505