Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1190 ATGGAAAACTCATATAGCAGTTTACCATTACTGGATCTTGTATCTGTTATCTTCTTTTATGCATTGTTCGTACAAGGTGTCATTGCTGACATTATAGCAGCTTCCAATTCCTCATCCACAAATGAGGAACAAAAAGCTTTTTATCAGAGTGGATGGGGAGCTCAAAATATCTCAGAATACTGTAAATGGAATGGTATTGTGTGCAATGAAGCTCAAAGTGTTACAGAGATTTCAACTAAGAACAATTTTTATATTCCTTCAACACAAGCTCATATTCAGCGTTTCAATGTGGCTGCATTCCCTGATTTAATCAGTCTAGAGCTTAGTGGATCAGGACTCAAAGGAAATATTCCTTTAGAAATTAGCTCTCTTAAAAAGCTTGTCCATCTTGATCTGTCTTCTAACTGTCTTCAAGGTGAGTTGCCTAGTTCTCTTTCAAGTCTCAATCAACTTCAGACACTAAATATTTCTAACAATTTTCTTACTGGTGAGATCCCTTCTACTTTACAGCACTTGATCCATCTCAAAGTTTTGGATCTTTCTCATAATAAGATTTCTGGTGTTATACCAAAGGGGATATCTGCACTGACAGAACTAACAAGTGTTCAACTATCTTGGAATCAAATAAATGGTTCCCTTCCATCTGGGATTGGGAAAATCCTAAGACTTCAAAGTTTAGATATTTCCAACAATCATCTTAAGGGACCTATCCCAGATGATGTTTTGAAGCATTGTCAGTATGTGCAGTTAAGGAATAACTCTTTAAATGGGAGCATTCCTTCTCCAGTAGGAAATATTTCATATCTAGATCTTAGTTATAATGACCTCACAGGCAACATACCTGAGGCCCTTCATTCTGTTTCTCACCTTAATTTGTCATACAATTCCTTTAATGCTTCAGATCACAGTTTTTGTGGTTTTCCAAAAGACTCTTTAATTGGTAACAAGGATATGAAAGATTCTTGCTCTTTTGATGTTGATGTTTCTGATGCTGATATTTCTCTTGTAATGATACTTGTCTTCTCTATCTTCAATGGCATGATTTTCTCAATGGTCCTTGTCTGTTGGGGAATTCATGTTTTCTGCCCCCTCCATAATGAGTTTGAAAATGGGCAAAGAAGAAAGAATGGAGACATGCTTTCAATTTGGAACTATGATGGTAAGATTGCATTTGAAGACATAATTAAGGCCACAGAAGACTTTGATATAAAGTATTGCATAGGAACGGGTGCTTATGGGAGTGTGTACAAAGCACAACTTCCCAGTGGCAGAATTGTTGCACTGAAAAAACTTCACAAAGCAGAATCTGAAAATCCATCCTCTTACAAGAGCTTTTGCAATGAGACCAAGATCTTGACAGAAATTCGCCATCGTAACATTATCAAGCTTTATGGCTTTTGTTTGCATAACAAGTGTATGTTTTTAGTGTATGAGTATATGGAAAGAGGAAGCTTATTTTGCAATTTGTCTTATGATGTTGAAGCTCAAGAGCTGAATTGGAGCAAGAGGATAAATGTTGTAAAAGGAATAGCCTATGGCTTGGCTCACATGCACCATGATTGTACCCCACCCATTGTTCATAGAGACATAAGCAGTAACAACATTTTGTTAAACTCAGAGTTGCAGGCTTTCATCTCAGACTTTGGCACTGCAAGACTTCTTGATTTGCATTCATCAAATCAGACTCTTCCTGCTGGTACTTATGGATATGTTGCTCCAGAATTGGCTTACACCTTGAGTGTGACCACCAAATGTGATGTTTATAGCTTTGGAGTGGTGGTTTTGGAAGCAATGATGGGTAGACATCCAGCTGAATTGATTTCTTGTTTATCAGAACCATCCATTCAGAAGAAGAAGCTGAAAGATATATTGGATTCACGTATTCCACTACCATATTTTAGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTGGCATTAGCATGTTTGAGTCCCCACCCAAAATCCAGACCATCAATGCAGGAAATAGCTAATGAGCTTTTAGCTTCCAAGCCACCATTGCTTTGGCATTTTGATAGCATTTCCATCCACCAACTCACGAAGCAAAAATGCACACTAGTGAAAAATGTGGAAAAAAACGTGACGCTCAAGATCTCCAGTCGCCACTGCTGTCATCCAACCAGTCCTGCTATTTGGCACTCCTCCGTGACGCTCTTCTTGATGTTCATGTCTGTGCCCCCACAATCGTTGTACTCTAGGGTTGTTGCTAGAGCTAGAGATGCTATGATTTGTGGTGTGCCTTCTCTTTGTATATCATTGAATTGGGAAAAGAATGCATTCAAGCTTTCCTCATCAACATCATTTCCATTGGACTATCCGATTAGAGGGGAAAAAGATGACATAAGCATCCACAACTTATAA 2385 0.3811 MENSYSSLPLLDLVSVIFFYALFVQGVIADIIAASNSSSTNEEQKAFYQSGWGAQNISEYCKWNGIVCNEAQSVTEISTKNNFYIPSTQAHIQRFNVAAFPDLISLELSGSGLKGNIPLEISSLKKLVHLDLSSNCLQGELPSSLSSLNQLQTLNISNNFLTGEIPSTLQHLIHLKVLDLSHNKISGVIPKGISALTELTSVQLSWNQINGSLPSGIGKILRLQSLDISNNHLKGPIPDDVLKHCQYVQLRNNSLNGSIPSPVGNISYLDLSYNDLTGNIPEALHSVSHLNLSYNSFNASDHSFCGFPKDSLIGNKDMKDSCSFDVDVSDADISLVMILVFSIFNGMIFSMVLVCWGIHVFCPLHNEFENGQRRKNGDMLSIWNYDGKIAFEDIIKATEDFDIKYCIGTGAYGSVYKAQLPSGRIVALKKLHKAESENPSSYKSFCNETKILTEIRHRNIIKLYGFCLHNKCMFLVYEYMERGSLFCNLSYDVEAQELNWSKRINVVKGIAYGLAHMHHDCTPPIVHRDISSNNILLNSELQAFISDFGTARLLDLHSSNQTLPAGTYGYVAPELAYTLSVTTKCDVYSFGVVVLEAMMGRHPAELISCLSEPSIQKKKLKDILDSRIPLPYFRKDMQDIVLVVTLALACLSPHPKSRPSMQEIANELLASKPPLLWHFDSISIHQLTKQKCTLVKNVEKNVTLKISSRHCCHPTSPAIWHSSVTLFLMFMSVPPQSLYSRVVARARDAMICGVPSLCISLNWEKNAFKLSSSTSFPLDYPIRGEKDDISIHNL* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1190 794 SUPERFAMILY Protein kinase-like (PK-like) 383 668 IPR011009 -
Vra9g1190 794 SUPERFAMILY L domain-like 59 309 - -
Vra9g1190 794 ProSiteProfiles Leucine-rich repeat profile. 174 197 IPR001611 GO:0005515
Vra9g1190 794 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Vra9g1190 794 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Vra9g1190 794 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 41 292 - -
Vra9g1190 794 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 99 688 - -
Vra9g1190 794 ProSiteProfiles Protein kinase domain profile. 401 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1190 794 Gene3D Transferase(Phosphotransferase) domain 1 480 674 - -
Vra9g1190 794 PRINTS Leucine-rich repeat signature 175 188 - -
Vra9g1190 794 PRINTS Leucine-rich repeat signature 220 233 - -
Vra9g1190 794 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515
Vra9g1190 794 Gene3D Ribonuclease Inhibitor 190 283 IPR032675 -
Vra9g1190 794 SMART LRR_typ_2 124 148 IPR003591 -
Vra9g1190 794 SMART LRR_typ_2 284 306 IPR003591 -
Vra9g1190 794 SMART LRR_typ_2 196 219 IPR003591 -
Vra9g1190 794 SMART LRR_typ_2 220 244 IPR003591 -
Vra9g1190 794 SMART LRR_typ_2 172 195 IPR003591 -
Vra9g1190 794 Pfam Protein kinase domain 405 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1190 794 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Vra9g1190 794 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Vra9g1190 794 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 99 688 - -
Vra9g1190 794 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 41 292 - -
Vra9g1190 794 Gene3D Phosphorylase Kinase; domain 1 366 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1190 Vra-Chr9 17559548 17567878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1190 103 573 Receptor kinase-like Gene Family AT4G08850 42.886 2.47e-111 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra9g1190 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1190 - - vra:106773464 1574.3