Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1187 ATGGGGCGTATGCACAGTAGAGGTAAGGGTATCTCCAGTTCGGCTCTTCCATATAAGAGGACCCCACCTAGCTGGTTGAAGATTTCGTCGCAGGATGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCCTCCCAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTGCTCAGGTTAAGAGTGTCACTGGAAGCAAGATTCTACGTATATTGAAAGCCCATGGGCTTGCTCCTGAAATTCCTGAGGATTTGTATCACTTGATCAAAAAGGCTGTCTCCATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACTAAGAAGCTCCCCCCCGTGTGGAAATATGAATCTACAACTGCCAGCACCCTTGTGGCTTAG 456 0.4627 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1187 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vra9g1187 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vra9g1187 151 Gene3D - 35 82 - -
Vra9g1187 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vra9g1187 151 Gene3D - 83 151 - -
Vra9g1187 151 PANTHER 40S RIBOSOMAL PROTEIN S13 1 151 - -
Vra9g1187 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
Vra9g1187 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vra9g1187 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Vra9g1187 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vra9g1187 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Vra9g1187 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1187 Vra-Chr9 17462714 17464880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1187 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.040 2.30e-103 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1187 K02953 - egr:104442247 300.441