Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1171 ATGGACGAAGCAAAAAAGTTTTATACTGAATATGCCATTTCAGAAGGATTTTCTGTGAGAACAAGAAATTCTAGAAAGGATAACAAGAACAATGTAACTTATTTGAGATTAGTTTGCTCCAAGGAAGGCAAATACGTGTCATCAATAAACCCTGAGGTAAAAACCCATCCTACCCAAACAAACCAATGTCCTGCNGGCATAACCATTTCAAAGAAGGATGAAAAATGGTATATAAGGACGGTTAACTTAGACCACAATCATGACCTATGCCCAAAGAATTCAAAGCTATTTGCTGGGAATAGGAAACTTAGCATGCAAGAAAAACGAACATTACAGGTTAATGACGATGCTGGAGTGAGGATAAATAAGAGTTTCCTGAGTATTGTCAGCGATGTCGGGGGATTCGATAACATGGACTTCATGGAGAGAGATGCTAGAAACTATATCGAACGACACAGAAGATCATTATGCAAAGACGGAGATGGACAAGCCCTATTAAGACACTTTTCGTCCATGAAAGATATGAATAATGACTTTTTTTACGACATTGATTTGGATGAAGGGAATAAAATATGTAGTGTGTTTTGGGCTGATGCAAGAAGTAGAGCAGCTTGTGAAGAATTTGGTGATGTCATTTCTTTTGACACAACATATTTGACTAATAAGTATGAAATGCCTTTTGCGCCGTTTGTTGGAGTTAACCATCACGGTCACTCAATTTTACTCGAATGTGGTTTGCTATCGTCTGAAGACACTTCATCTTTTGTTTGGTTGTTCGAATGTTGGATGAGATGCATGGGTAACAAGGCCCCAGATGGGATTATCACTGATCAATGTAGAGCAATGGCGAATGCCATCAAAGAAGTATTTCCTAATAGTAGGCATAGGTGGTGTTTATGGCATATAATGAAAAAAGTGCCGGAAAAATTAAGTGGATATAAACAATATGTTAACATCAAGAGTCATCTCAACGCACTTATCTATGATTGTGGTTGTCTGACGGAGTTTGAGAATGGGTGGGCTGATTTAGTTAACACGTATGGATTGGAGGATAATGAATGGTTATTTAGTTTGTATGACGAAAGACATAAATGGGTTCCTTGTTACCTTAGGAATGATTTTTGGGCTGGAATGTCAACTACACAACGAAGNGAGGGAATGAATGCTTTCTTTGATGGATTTATAAATTCAAGTACCTCACTCCAACAATTTGTGGTGCAATACGACAATGCATTAAAGGTCAAGGCCCAAAAAGAAACACAAGCTGATTTCTCGTCCCTAAATACCACAATTGGTTGTGGGTCGCAGTCACCAATTGAGAGACAATTCCAACTTGAGTACACACATGAAAAGTTTGAAGAAGTGCAAAAAGAATTTCGATCTCGGATGAATTGTTTTATCAAAGAAACGAATACGGACAACGAATGCAATATTTACACAATCAAAGAGGAGCAAATGTGGGAAGGAAAATGTTCAAATAAATTTTACAAAGTGCAGTTTGATCCAGTGACAAAACAAGCCACCTGTTCTTGCCTTCTATTCGAATTCAGAGGCATTGTTTGTCGACATGCCCTCTTGGTATTTGGACAAGAAGATGTATATAGTGTGCCTGTGAAATACATTCTACGGCGTTGGAGTAAAAATGTNCGTAGAAGACACACTCTAATTAGAGCCTCGTATAGTAATTCCAACCAACAACCGTCGATGCAAAGATATCAAATGTTGTGCAAACAGTTCTATGACATCGCAGAGGTTGCATGTGAGTCTGAAGGTTGTTCTGAACAGTTGAAAAAAGATCTTGATCTACTGCGACACAAGTTTGGATGTAGTTCGTCCATCAAAAATAACATTATTAGTGATGGGGGCGAACTACGATACGAGAAGCCAGATTCCCCAACAATACAGGACAGTGGTGGTGCACGTGATGATGTTATTGTGCGTAGCCCACTACAAGTNAAGCGCAAGGGAAGACCACGCACCAATAGACTAAAGTCAACCTTGGAGAAAAAAAACCAGTCAAAGAAGAAGAATTTCAAAGAAAACTACTACAACAACTGTTCATGA 2064 0.3857 MDEAKKFYTEYAISEGFSVRTRNSRKDNKNNVTYLRLVCSKEGKYVSSINPEVKTHPTQTNQCPAGITISKKDEKWYIRTVNLDHNHDLCPKNSKLFAGNRKLSMQEKRTLQVNDDAGVRINKSFLSIVSDVGGFDNMDFMERDARNYIERHRRSLCKDGDGQALLRHFSSMKDMNNDFFYDIDLDEGNKICSVFWADARSRAACEEFGDVISFDTTYLTNKYEMPFAPFVGVNHHGHSILLECGLLSSEDTSSFVWLFECWMRCMGNKAPDGIITDQCRAMANAIKEVFPNSRHRWCLWHIMKKVPEKLSGYKQYVNIKSHLNALIYDCGCLTEFENGWADLVNTYGLEDNEWLFSLYDERHKWVPCYLRNDFWAGMSTTQRXEGMNAFFDGFINSSTSLQQFVVQYDNALKVKAQKETQADFSSLNTTIGCGSQSPIERQFQLEYTHEKFEEVQKEFRSRMNCFIKETNTDNECNIYTIKEEQMWEGKCSNKFYKVQFDPVTKQATCSCLLFEFRGIVCRHALLVFGQEDVYSVPVKYILRRWSKNVRRRHTLIRASYSNSNQQPSMQRYQMLCKQFYDIAEVACESEGCSEQLKKDLDLLRHKFGCSSSIKNNIISDGGELRYEKPDSPTIQDSGGARDDVIVRSPLQVKRKGRPRTNRLKSTLEKKNQSKKKNFKENYYNNCS* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1171 687 ProSiteProfiles Zinc finger SWIM-type profile. 496 532 IPR007527 GO:0008270
Vra9g1171 687 Pfam SWIM zinc finger 496 528 IPR007527 GO:0008270
Vra9g1171 687 Pfam FAR1 DNA-binding domain 6 90 IPR004330 -
Vra9g1171 687 SMART 26again6 507 534 IPR006564 GO:0008270
Vra9g1171 687 PANTHER OS03G0843700 PROTEIN 2 575 - -
Vra9g1171 687 MobiDBLite consensus disorder prediction 622 641 - -
Vra9g1171 687 Pfam MULE transposase domain 211 305 IPR018289 -
Vra9g1171 687 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 575 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1171 Vra-Chr9 17048778 17050841 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra9g1171 MULE 3.6e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1171 - - vra:106778928 1044.65