Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1163 ATGTACACAACACAGGGACTGAATATATTCGTTCTTGGTTTCTCTCTTCACAGCATGGAAAAAATCAGTGAGACAACCAATCTAAAGAATCCCATATTGGTGGTTAAAATTAGGAAAATAATTATCTGCCATGAAAAAGAGATTTTGATATCAGGATTCTTTGCATTGCTTAAGGTGCTGACTGTGTCTTCTGGTCCTGTACTTCTAAATGCCTTTATACTGGTAGCTGAGGGTAATGAAAGTTTTAAGTATGAAGGCTATGTATTGGTCATATCACTTTTCATTATAAAGGTCATAGAGTCCCTATCACAAAGGCAGTGGTACTTCCGCAGTAGACTTATTGGGATGAAAGTTAGGTCATTGCTTACTGCAGCCATTTATAAAAAACTGTTGAGGTTGTCCAATGTTGCGAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAGTTTCCATTTTGGTTTCACCAAACATGGACTGCAAGTGTCCAACTATGTATTGCATTAGTAATACTTTTTCGTGCCATTGGGATGGCAACTATTGCCTCATTGGTGGTGATAGTTCTCACTGTGTTGTGCAATACTCCAATAGCTAAGTTACAACACAAGTTTCAGACAGAACTTATGGTGTCACAAGATGAGAGATTGAAGGCTATTTCTGAAGCTCTTTNGAATATGAAAGTTCTAAAGNTATATGCATGGGAAAATCATTTTAAAAATGCTATAGAGAAGTTAAGAAAAGAGGAACTCAAATTGTTAGCTGCAGTGCAACTACGAAAGGCATACAACGTAATTATCTTTTGGTCTTCGCCTGTTTTGGTTTCTGCTGCTTCTTTTGGGGTGTGTTACTTCCTTAAAGTTCCATTGCATGCAAATAATGTTTTCACATTTGTAGCAGCTCTACGGATTGTGCAAGAGCCAATTACAACCATCCCAGATGTTATCGGGGTGGTTATTCAAGCTAAGGTTGCATTTACTCGAATTATTAAGTTCCTTGAGGCACCTGAACTACGAAGTAACAGTTTTAGNAAAAAGAGCTTTGTTANCAATATTAATGACTCAATTATAATCAAACATGCCGATTTTTCGTGGGAAGATAATGTATTAAAGCCAACATTGAGGAACATAAATCTGGAGATTAAACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGAAAATCAACCCTCTTATCACTGATTCTTGGAGAGGTTCCTATCGCAAAAGGAACTATAGACATTTATGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGTACTGTAAGGGAAAATATTTTGTTTGGATCGGAATTAGATGCTGAAAGATATCAAGAAACACTTCATAGATCTTCACTAGTGAAGGACCTGGAGTTGTTTCCCAATGGTGACCTAACAGAAATAGGTGAGAGAGGAGTTACCTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTTTTTATCAGAATGCTGATATATCTTTGGATGATCCATTCAGTGCTGTTGATGCCCATACTGCGACAAATTTGCTTAATGACTACATCATGGAAGGACTTAAAGAGAAAACAGTATTAGTAGTAACCCATCAAGTTGACTTCCTACCAGCATTTGATTATGTTTTGTTAATTTTAAAGGGGGAAATCCTTGAAGTTGCTCCTTATCATCATCTATTGAGCTCAAGTAAAGAATTTCAGAACCTCGTCAATGCTCACAAGAAGACGGCTGGTTCTAACGAGCTTGTGAATGTTACTTTTTCCAAGAGACATCCAACTTCTGTTAGAGAGATTAGACAAGCTTTCATGAAAAACCAATTCAACATAGCACAGAGTAAATTAATAAAGCAGGAAGAGAGAGAGATAGGAGACACTGGGTTGAAGCCTTACTTACAATATCTGAATCAAATGAAGTGCTATATACTCTTCTCTGTTGCTGCTCTTTGTCACCTTGCATTTTCAATTTTCCAAATATTGCAAAACTTATGGATGGCTACAAATGTTGATAATCATCATGTCAGCACGTTGCGGTTGATTGTAGTTTACTTCTTGATTGGAGTTATTTCGATACTTTTCATGTTCATTAGAAGTTTTAGTCTTGTTTTTTTGGGGTTTCTTTCATCAAAGTATCTTTTTCTACAATTAATGAACTCACTATTTCGTGCACCAATGTCTTTTTATGACTCTACACCATTAGGAAGAATACTTAGTAGGGTTTCATCAGATCTTAGCATTGTGGACCTTGATATTCCATTTAGCCTCACCTTTACTGTGGGAGCAACAATAAACGCTTATTCAACTCTGATAGTTTTAGCAGTTGTCACTTGGCCAGTCTTGGTTATCTCAATACCATTACTTTATATTGCAATTCGCTTGCAGAGATATTACTTTGCCTCTGCTAAAGAAGTAATGCGGATGAATGGCACAACAAAATCCTTTGTGGCTAATCATATTGCTGAAACTGTTGCTGGAGTTGTAACAATAAGGGCTTTTGAGGAGGAATATCGTTATTTTGTAAAGAATCTTGATTTGATTGACATCAATGCTAGTTCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCTACGTTTAGAAACTGTAGCTGCAGTTGTACTTTCCTTCTCAGCACTTTGCATGGTCTTGTTTCCACCTGGGACTTTTACATCTGGATTTATTGGCATGGNTCTCTCTTATGGCCTTACACTAAGCTTTTCCTTAGTATTTTCAATTCAAAGTCAATGCAGCCTTGCAAATTACATAGTATCTGTAGAGAGGTTAAATCAGTATATGCATATACAAAGTGAGGCTGCAGAAGTAATAGAAACAAAACGCCCTCCTTTTAATTGGCCAGATAAAGGTGAAATAGAAATAAATGACTTGCAGGTACGATACAGGCCTGATGGACCCCTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGGTTGGAATTGTTGGCAGAACAGGCAGTGGAAAGTCCACTCTTATTGGTTCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTGTTGTGGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATTCAATTTGGACCCTTTGTCTCAACACTCTGATAAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAGAAAGAAGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAGAGGCAGCTGTTTTGTTTGGGGCGTGCTATTTTGAGAAGTAGTAAGATATTGGTGCTAGATGAAGCCACAGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCTGATTGTACAGTAATAACAGTAGCACACAGAATACCAACTGTGATGGATTGCACTGTGGTTCTTTCAATCAGTGATGGAAAATTGGTGGAATATGATGAACCAAATACCTTGATGAAGAGAGAAGGGTCATTGTTCAGAGAACTTGTCCGAAAATATTGGTCTCATTTTCACTCTTCAGAATCCCATTGA 3654 0.3793 MYTTQGLNIFVLGFSLHSMEKISETTNLKNPILVVKIRKIIICHEKEILISGFFALLKVLTVSSGPVLLNAFILVAEGNESFKYEGYVLVISLFIIKVIESLSQRQWYFRSRLIGMKVRSLLTAAIYKKLLRLSNVARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTASVQLCIALVILFRAIGMATIASLVVIVLTVLCNTPIAKLQHKFQTELMVSQDERLKAISEALXNMKVLKXYAWENHFKNAIEKLRKEELKLLAAVQLRKAYNVIIFWSSPVLVSAASFGVCYFLKVPLHANNVFTFVAALRIVQEPITTIPDVIGVVIQAKVAFTRIIKFLEAPELRSNSFXKKSFVXNINDSIIIKHADFSWEDNVLKPTLRNINLEIKHGQKVAICGEVGSGKSTLLSLILGEVPIAKGTIDIYGKFAYVSQTAWIQTGTVRENILFGSELDAERYQETLHRSSLVKDLELFPNGDLTEIGERGVTLSGGQKQRIQLARAFYQNADISLDDPFSAVDAHTATNLLNDYIMEGLKEKTVLVVTHQVDFLPAFDYVLLILKGEILEVAPYHHLLSSSKEFQNLVNAHKKTAGSNELVNVTFSKRHPTSVREIRQAFMKNQFNIAQSKLIKQEEREIGDTGLKPYLQYLNQMKCYILFSVAALCHLAFSIFQILQNLWMATNVDNHHVSTLRLIVVYFLIGVISILFMFIRSFSLVFLGFLSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLTFTVGATINAYSTLIVLAVVTWPVLVISIPLLYIAIRLQRYYFASAKEVMRMNGTTKSFVANHIAETVAGVVTIRAFEEEYRYFVKNLDLIDINASSFFHSFASNEWLILRLETVAAVVLSFSALCMVLFPPGTFTSGFIGMXLSYGLTLSFSLVFSIQSQCSLANYIVSVERLNQYMHIQSEAAEVIETKRPPFNWPDKGEIEINDLQVRYRPDGPLILHGITCTFKAGHKVGIVGRTGSGKSTLIGSLFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRFNLDPLSQHSDKEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTVVLSISDGKLVEYDEPNTLMKREGSLFRELVRKYWSHFHSSESH* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1163 1217 Gene3D - 954 1206 IPR027417 -
Vra9g1163 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 586 IPR027417 -
Vra9g1163 1217 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 49 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g1163 1217 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 659 934 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g1163 1217 SMART AAA_5 997 1180 IPR003593 -
Vra9g1163 1217 SMART AAA_5 391 563 IPR003593 -
Vra9g1163 1217 CDD ABC_6TM_ABCC_D1 50 337 IPR044746 GO:0140359
Vra9g1163 1217 Gene3D ABC transporter type 1, transmembrane domain 34 341 IPR036640 GO:0005524|GO:0016021
Vra9g1163 1217 SUPERFAMILY ABC transporter transmembrane region 36 345 IPR036640 GO:0005524|GO:0016021
Vra9g1163 1217 Pfam ABC transporter transmembrane region 49 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g1163 1217 Pfam ABC transporter transmembrane region 655 919 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g1163 1217 Pfam ABC transporter 988 1136 IPR003439 GO:0005524
Vra9g1163 1217 Pfam ABC transporter 382 514 IPR003439 GO:0005524
Vra9g1163 1217 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 22 1217 - -
Vra9g1163 1217 CDD ABC_6TM_ABCC_D2 657 946 IPR044726 GO:0140359
Vra9g1163 1217 Gene3D ABC transporter type 1, transmembrane domain 620 952 IPR036640 GO:0005524|GO:0016021
Vra9g1163 1217 SUPERFAMILY ABC transporter transmembrane region 644 954 IPR036640 GO:0005524|GO:0016021
Vra9g1163 1217 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 586 IPR003439 GO:0005524
Vra9g1163 1217 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 971 1205 IPR003439 GO:0005524
Vra9g1163 1217 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 22 1217 - -
Vra9g1163 1217 CDD ABCC_MRP_domain2 969 1189 - -
Vra9g1163 1217 Gene3D - 342 605 IPR027417 -
Vra9g1163 1217 CDD ABCC_MRP_domain1 364 563 - -
Vra9g1163 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 962 1204 IPR027417 -
Vra9g1163 1217 ProSitePatterns ABC transporters family signature. 489 503 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1163 Vra-Chr9 16831424 16837522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1163 366 610 Calmodulin-binding Proteins AT2G36910 29.057 2.99e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1163 K05666 - gmx:100787314 1877.83