Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1153 ATGCGGAGCTTCAGGATGAGAACCCTGTTGTCCCGTGTGAAGAGGAGAACAAAGAAAACTATCAGAAACCGAAAAATAACCATAGGAAACTGCATTTCCATATCAAAAGAGTTAGCACGTGTAGTGGAACAAAAACATGAAGAAGAAGAAGATGTTGTTGAGGAAGGTTTCAGCATCAAAAGTTCTGCTCCTTCACACACTCACGGTGTTCAGCCCTTGGGAAATCTCTATCTCAACTCCAGTTCCGTTAACTCTAGAGACACCGGCTTAGGTAATCTTCATACTCTTTCGGATGAGCTTGTTCTTGACATGCTTGGGTTTTTGGATGCTTCTTCCTTGGGGGTTTTGGCCGCTGTGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCTTTTGGAAGAATCTCGTGTTGAAGAACTTTCTAAGTGGGTTTCAGTACAAAGGGTCTTGGAAATCTACCTATGTTACGGCCTGTTACCCTTCATTCGGTAACTCTGCTATTGCTCTCGGGGGTTTCAAAGTTAGAGACTTTTACTCCGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGAAAGAGGGGAATTTCGGTTGAGGAGTTTGTGTTGAATTTTGAGGAAACTAATAGGCCGGTGTTATTGGAAGGGTGTATTGATAATTGGAGTGCATTGGGAAATTGGGATAGGGATTATTTGGTAAGATTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAACTTGGAGATTACTTTGGGTACTCTGATCAGGTTAGAGAGGAAAGGCCTCTATATTTGTTTGATCCTAAATTTGCTGAAAAAGTTCCAAAATTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGATTTGTTTGGTGTTTTGGGTAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGGTCTGGATCCTCTTTCCACGTTGATCCAAATTCGACCTCAGCTTGGAATGCAGTGATCAAGGGATCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCGCCTGGTGTTCATCCTAGTCCTGATGGGGCCGATGTTGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTTGAAAAGGAAACCAATTGAGTGTGTGTGTAAAGCTGGAGAGCTCATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCTATCGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAAGGTCTTGGATTTTCTTAAAAGGCCAAATGCTAGCACACTAGTATCTGGAACAAGGGATCGAGTGAATTTGTATGATAAGTTTAAGAATGCTATGGAGGCTTCTTTTCCAGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAAAGGAAACTTTCCTTTTGGGATTCTGTCGCAGATGCTAATGCAGGAGCTTTCAAGTTTTCTTTCTAG 1545 0.422 MRSFRMRTLLSRVKRRTKKTIRNRKITIGNCISISKELARVVEQKHEEEEDVVEEGFSIKSSAPSHTHGVQPLGNLYLNSSSVNSRDTGLGNLHTLSDELVLDMLGFLDASSLGVLAAVSKSFYVFTNHEPFWKNLVLKNFLSGFQYKGSWKSTYVTACYPSFGNSAIALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEETNRPVLLEGCIDNWSALGNWDRDYLVRLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNLKRKPIECVCKAGELIFVPSGWWHLVINLEESIAITQNYVSRRNLVKVLDFLKRPNASTLVSGTRDRVNLYDKFKNAMEASFPGEIDELTRKEEERKIQQRKLSFWDSVADANAGAFKFSF* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1153 514 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 59 512 - -
Vra9g1153 514 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 59 512 - -
Vra9g1153 514 Pfam Cupin-like domain 214 432 IPR041667 -
Vra9g1153 514 ProSiteProfiles JmjC domain profile. 289 449 IPR003347 -
Vra9g1153 514 SMART fbox_2 96 136 IPR001810 GO:0005515
Vra9g1153 514 SMART cupin_9 280 449 IPR003347 -
Vra9g1153 514 Gene3D - 81 161 - -
Vra9g1153 514 SUPERFAMILY Clavaminate synthase-like 206 447 - -
Vra9g1153 514 ProSiteProfiles F-box domain profile. 90 136 IPR001810 GO:0005515
Vra9g1153 514 SUPERFAMILY F-box domain 85 159 IPR036047 GO:0005515
Vra9g1153 514 Gene3D Cupin 185 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1153 Vra-Chr9 16334970 16337719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1153 84 438 Glycosyltransferase AT1G78280 39.286 6.95e-78 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra9g1153 Cupin_8 9.1e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1153 - - gmx:100782241 932.169